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Sample GSM2335231 Query DataSets for GSM2335231
Status Public on Apr 04, 2017
Title 66-SZ-L3-1
Sample type RNA
 
Source name dorsolateral prefrontal cortex
Organism Homo sapiens
Characteristics tissue: dorsolateral prefrontal cortex
cell type: pyramidal neuron cell
shape: characteristic triangular shape and prominent apical dendrite
genotype: Schizophrenia
dsm-iv diagnoses: SA; AAR
Treatment protocol An independent committee of experienced research clinicians made consensus DSM-IV diagnoses for each subject using information obtained from medical records and structured diagnostic interviews conducted with the decedent’s family members.
Growth protocol Brain specimens were obtained during autopsies conducted at the Allegheny County Office of the Medical Examiner (Pittsburgh, PA) after consent was obtained from the next-of-kin.
Extracted molecule total RNA
Extraction protocol For each sample, RNA was extracted using the QIAGEN® RNeasy Plus Micro kit (QIAGEN, Valencia).
Label Encore Biotin module (Nugen)
Label protocol Labeled using the Encore Biotin module (Nugen).
 
Hybridization protocol CDNA was synthesized and amplified using the Ovation Pico WTA System.
Scan protocol Loaded on an Affymetrix GeneChip® U219.
Description Gene expression data for subject 66, diagnosis SZ, layer 3, replicate 1
Data processing Expression intensities were extracted from Affymetrix Expression Console and normalized using Robust Multi-array Average Express.
 
Submission date Oct 04, 2016
Last update date Apr 04, 2017
Contact name David Lewis
E-mail(s) lewisda@upmc.edu
Organization name University of Pittsburgh
Department Psychiatry and Neuroscience
Street address 3811 O'Hara St
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL13667
Series (1)
GSE87610 Gene expression of L3 and L5 pyramidal neurons in the DLPFC comparing schizophrenia from bipolar major depressive disorders and unaffected subjects.

Data table header descriptions
ID_REF
VALUE Background corrected, log2 transformed and then quantile normalized gene expression intensity.

Data table
ID_REF VALUE
AFFX-DapX-5_at 2.576618
AFFX-DapX-M_at 2.242445
AFFX-DapX-3_at 2.131263
AFFX-LysX-5_at 1.96781
AFFX-LysX-M_at 2.347421
AFFX-LysX-3_at 2.230133
AFFX-PheX-5_at 2.129214
AFFX-PheX-M_at 2.927896
AFFX-PheX-3_at 2.472208
AFFX-ThrX-5_at 2.128714
AFFX-ThrX-M_at 1.988902
AFFX-ThrX-3_at 2.537532
AFFX-TrpnX-5_at 2.172835
AFFX-TrpnX-M_at 2.286979
AFFX-TrpnX-3_at 2.175541
AFFX-r2-Ec-bioB-5_at 8.771905
AFFX-r2-Ec-bioB-M_at 9.039467
AFFX-r2-Ec-bioB-3_at 8.860651
AFFX-r2-Ec-bioC-5_at 10.10066
AFFX-r2-Ec-bioC-3_at 10.03085

Total number of rows: 49386

Table truncated, full table size 1081 Kbytes.




Supplementary file Size Download File type/resource
GSM2335231_5500994192207072414573_F03.cel.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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