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Sample GSM2330236 Query DataSets for GSM2330236
Status Public on Sep 30, 2016
Title 4_050531_g556
Sample type genomic
 
Channel 1
Source name YMD25
Organism Saccharomyces bayanus
Characteristics strain name: ancestral S. uvarum strain
Biomaterial provider Monica Sanchez, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://dunham.gs.washington.edu/UWyeastDNAprep.pdf
Label Cy3
Label protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
 
Channel 2
Source name evolved sbay
Organism Saccharomyces bayanus
Characteristics strain name: evolved S. uvarum strain
Biomaterial provider Monica Sanchez, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : Genomic DNA
Extraction method : Hoffman-Winston prep http://dunham.gs.washington.edu/UWyeastDNAprep.pdf
Label Cy5
Label protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
 
 
Hybridization protocol reference URL : http://dunham.gs.washington.edu/UWAgilentDNA.pdf
Scan protocol Pixel Size : 909.090909090909
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505C
Scanning software : ChipScan
Scanning software version : A.8.3.1
Description 4_050531_g556
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 10.5.1.1
Datafile type : Agilent result file
 
Submission date Sep 27, 2016
Last update date Sep 30, 2016
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL22491
Series (1)
GSE87401 Differential paralog divergence modulates evolutionary outcomes in yeast

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio
R_MEAN_SIGNAL Mean foreground intensity Ch 2.
G_MEAN_SIGNAL Mean foreground intensity Ch 1.

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL R_MEAN_SIGNAL G_MEAN_SIGNAL
1 -.724 42.60285 70.3663
2 -.65 43.44248 68.18066
3 -.58 40.09516 59.93579
4 -.522 40.58047 58.27479
5 -.568 40.45283 59.99041
6 -.4 43.16447 56.96261
7 -.371 42.99275 55.58678
8 -.47 38.6418 53.54079
9 -.527 41.71851 60.09964
10 -.369 44.83787 57.8998
11 -.364 44.26005 56.95556
12 -.008 1510.12 1518.428
13 -.146 910.9991 1007.67
14 -.098 696.0819 745.2448
15 .145 975.2596 882.1932
16 .234 973.2118 827.2444
17 .666 13073.52 8240.481
18 .203 1141.582 991.9771
19 .106 1125.646 1046.118
20 .004 799.9687 797.96

Total number of rows: 45220

Table truncated, full table size 1366 Kbytes.




Supplementary file Size Download File type/resource
GSM2330236_4_050531_g556_supplement.txt.gz 4.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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