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Sample GSM23238 Query DataSets for GSM23238
Status Public on Jul 02, 2004
Title LFY4h3
Sample type RNA
 
Channel 1
Source name Callus of 35S:LFY-GR plants treated for 4 hours with a control solution
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Channel 2
Source name Callus of 35S:LFY-GR plants treated for 4 hours with a dexamethasone-containing solution
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
 
Description Dye-labeled RNA samples derived from dexamethasone- or mock-treated 35S:LFY-GR root explants were co-hybridized to a cDNA array enriched for flower-specific transcripts. The data were analyzed with Rosetta Resolver as described in Wagner et al. (2004).
 
Submission date May 17, 2004
Last update date May 27, 2005
Contact name Frank Wellmer
E-mail(s) wellmer@caltech.edu
Phone 626-395-8438
Organization name California Institute of Technology
Department Biology 156-29
Lab Meyerowitz
Street address 1200 E. California Blvd.
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL1069
Series (1)
GSE1411 LEAFY-GR time-course experiment in callus

Data table header descriptions
ID_REF
Intensity1 Absolute intensity measurement for the mock-treated sample after background subtraction and normalization
Intensity2 Absolute intensity measurement for the dexamethasone-treated sample after background subtraction and normalization
P-value Value describing the confidence that the element's expression ratio reflects a change in expression not due to measurement errors
VALUE Log10 ratio (Intensity2 divided by Intensity1)
Flagged? Indicates whether data from the array element were marked as failed during quality control procedures

Data table
ID_REF Intensity1 Intensity2 P-value VALUE Flagged?
GP000A1 0.45287 0.56245 0.611 0.09471 FALSE
GP000A2 0.09285 0.10733 0.68395 0.06351 FALSE
GP000A3 0.04067 0.09058 0.26056 0.34834 FALSE
GP000A4 0.02238 0.02346 0.94667 0.02117 FALSE
GP000B1 0.02399 0.03218 0.62027 0.12821 FALSE
GP000B2 0.01552 0.01732 0.91581 0.04817 FALSE
GP000B3 0.01816 0.02317 0.83379 0.1064 FALSE
GP000B4 0.03923 0.04002 0.96272 0.00921 FALSE
GP000C1 0.08824 0.08117 0.72921 -0.03568 FALSE
GP000C2 0.0184 0.02167 0.88281 0.07177 FALSE
GP000C3 0.01864 0.01415 0.67967 -0.11899 FALSE
GP000C4 0.53809 0.47523 0.74684 -0.05336 FALSE
GP000D1 0.02261 0.02977 0.63249 0.1201 FALSE
GP000D2 0.03228 0.04346 0.81892 0.12984 FALSE
GP000D3 0.03419 0.06014 0.25236 0.24583 FALSE
GP000D4 0.03755 0.05898 0.33049 0.19673 FALSE
GP000E1 0.03419 0.03218 0.89039 -0.02568 FALSE
GP000E2 0.01864 0.02137 0.82622 0.06014 FALSE
GP000E3 0.01169 0.01588 0.78966 0.13357 FALSE
GP000E4 0.03347 0.03309 0.99531 -0.00439 FALSE

Total number of rows: 10816

Table truncated, full table size 483 Kbytes.




Supplementary file Size Download File type/resource
GSM23238.gpr.gz 897.2 Kb (ftp)(http) GPR

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