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Sample GSM231778 Query DataSets for GSM231778
Status Public on Aug 19, 2009
Title Whole embryo 2
Sample type RNA
 
Source name Xenopus Laevis Stage 15 whole embryo
Organism Xenopus laevis
Characteristics Xenopus Laevis Stage 15 whole embryo
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 171.04877
AFFX-BioB-M_at 237.68796
AFFX-BioB-3_at 260.3931
AFFX-BioC-5_at 553.21924
AFFX-BioC-3_at 263.30255
AFFX-BioDn-5_at 950.5066
AFFX-BioDn-3_at 3202.1753
AFFX-CreX-5_at 4544.369
AFFX-CreX-3_at 8567.79
AFFX-DapX-5_at 3.801427
AFFX-DapX-M_at 3.9863515
AFFX-DapX-3_at 3.6307373
AFFX-LysX-5_at 3.0891333
AFFX-LysX-M_at 3.6090791
AFFX-LysX-3_at 4.2826943
AFFX-PheX-5_at 4.1122212
AFFX-PheX-M_at 3.8113868
AFFX-PheX-3_at 3.6512434
AFFX-ThrX-5_at 3.6094577
AFFX-ThrX-M_at 4.0859585

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231778.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM231778.CHP.gz 88.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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