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Sample GSM231777 Query DataSets for GSM231777
Status Public on Aug 19, 2009
Title Whole embryo 1
Sample type RNA
 
Source name Xenopus Laevis Stage 15 whole embryo
Organism Xenopus laevis
Characteristics Xenopus Laevis Stage 15 whole embryo
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 196.81961
AFFX-BioB-M_at 248.39575
AFFX-BioB-3_at 246.69011
AFFX-BioC-5_at 529.6254
AFFX-BioC-3_at 247.16344
AFFX-BioDn-5_at 825.0328
AFFX-BioDn-3_at 2783.1226
AFFX-CreX-5_at 4149.9937
AFFX-CreX-3_at 8131.3237
AFFX-DapX-5_at 3.8725786
AFFX-DapX-M_at 4.023815
AFFX-DapX-3_at 3.581913
AFFX-LysX-5_at 3.6581824
AFFX-LysX-M_at 3.9585733
AFFX-LysX-3_at 4.4291835
AFFX-PheX-5_at 3.6046395
AFFX-PheX-M_at 4.0254297
AFFX-PheX-3_at 3.8162203
AFFX-ThrX-5_at 3.3354297
AFFX-ThrX-M_at 3.9194653

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231777.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM231777.CHP.gz 88.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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