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Sample GSM231776 Query DataSets for GSM231776
Status Public on Aug 19, 2009
Title Posterior neural plate 3
Sample type RNA
 
Source name Xenopus Laevis Stage 15 posterior neural plate
Organism Xenopus laevis
Characteristics Xenopus Laevis Stage 15 posterior neural plate
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 361.4261
AFFX-BioB-M_at 514.6715
AFFX-BioB-3_at 495.72263
AFFX-BioC-5_at 959.197
AFFX-BioC-3_at 429.95605
AFFX-BioDn-5_at 1396.7246
AFFX-BioDn-3_at 4172.2
AFFX-CreX-5_at 5190.1987
AFFX-CreX-3_at 8543.215
AFFX-DapX-5_at 4.009899
AFFX-DapX-M_at 3.9660869
AFFX-DapX-3_at 4.0724583
AFFX-LysX-5_at 4.09003
AFFX-LysX-M_at 4.93167
AFFX-LysX-3_at 4.8010187
AFFX-PheX-5_at 3.9601343
AFFX-PheX-M_at 4.0931263
AFFX-PheX-3_at 4.505496
AFFX-ThrX-5_at 3.600288
AFFX-ThrX-M_at 4.0730157

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231776.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM231776.CHP.gz 90.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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