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Sample GSM231774 Query DataSets for GSM231774
Status Public on Aug 19, 2009
Title Posterior neural plate 1
Sample type RNA
 
Source name Xenopus Laevis Stage 15 posterior neural plate
Organism Xenopus laevis
Characteristics Xenopus Laevis Stage 15 posterior neural plate
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 200.71606
AFFX-BioB-M_at 278.79706
AFFX-BioB-3_at 283.62708
AFFX-BioC-5_at 564.6335
AFFX-BioC-3_at 268.0573
AFFX-BioDn-5_at 929.09796
AFFX-BioDn-3_at 3095.9568
AFFX-CreX-5_at 4416.55
AFFX-CreX-3_at 8633.506
AFFX-DapX-5_at 4.0615935
AFFX-DapX-M_at 3.604287
AFFX-DapX-3_at 3.5173843
AFFX-LysX-5_at 3.7863548
AFFX-LysX-M_at 3.8640797
AFFX-LysX-3_at 4.1166954
AFFX-PheX-5_at 3.838447
AFFX-PheX-M_at 3.7251494
AFFX-PheX-3_at 4.1478133
AFFX-ThrX-5_at 3.9130652
AFFX-ThrX-M_at 4.3420205

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231774.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM231774.CHP.gz 89.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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