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Sample GSM231766 Query DataSets for GSM231766
Status Public on Aug 19, 2009
Title Lateral endoderm 3
Sample type RNA
 
Source name Stage 15 Xenopus Laevis lateral endoderm
Organism Xenopus laevis
Characteristics Stage 15 Xenopus Laevis lateral endoderm
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin Labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 440.24265
AFFX-BioB-M_at 533.1122
AFFX-BioB-3_at 556.48914
AFFX-BioC-5_at 1093.7312
AFFX-BioC-3_at 539.31836
AFFX-BioDn-5_at 1664.7574
AFFX-BioDn-3_at 4705.4116
AFFX-CreX-5_at 5873.206
AFFX-CreX-3_at 9957.919
AFFX-DapX-5_at 4.2054634
AFFX-DapX-M_at 3.8665464
AFFX-DapX-3_at 3.9068003
AFFX-LysX-5_at 3.6950712
AFFX-LysX-M_at 3.7077172
AFFX-LysX-3_at 3.9819212
AFFX-PheX-5_at 4.3825665
AFFX-PheX-M_at 4.291341
AFFX-PheX-3_at 4.5968823
AFFX-ThrX-5_at 3.7458992
AFFX-ThrX-M_at 4.24077

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231766.CEL.gz 1.7 Mb (ftp)(http) CEL
GSM231766.CHP.gz 90.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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