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Sample GSM231763 Query DataSets for GSM231763
Status Public on Aug 19, 2009
Title Eye primordia 3
Sample type RNA
 
Source name Xenopus Laevis Stage 15 eye primordia
Organism Xenopus laevis
Characteristics Xenopus Laevis Stage 15 eye primordia
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin Labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to stage 15 whole embryos when analyzing EP, PNP and LE samples.
 
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9175 Eye primordia vs. posterior neural plate vs. lateral endoderm normalized the whole embryos

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 299.78082
AFFX-BioB-M_at 363.12643
AFFX-BioB-3_at 368.2858
AFFX-BioC-5_at 712.96155
AFFX-BioC-3_at 315.75113
AFFX-BioDn-5_at 1003.7029
AFFX-BioDn-3_at 3627.3325
AFFX-CreX-5_at 4299.926
AFFX-CreX-3_at 8059.294
AFFX-DapX-5_at 3.94197
AFFX-DapX-M_at 3.845383
AFFX-DapX-3_at 4.2043133
AFFX-LysX-5_at 3.8394973
AFFX-LysX-M_at 4.042495
AFFX-LysX-3_at 4.4846883
AFFX-PheX-5_at 3.7617617
AFFX-PheX-M_at 4.4822245
AFFX-PheX-3_at 4.9029894
AFFX-ThrX-5_at 3.6357477
AFFX-ThrX-M_at 4.820404

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231763.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM231763.CHP.gz 91.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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