NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM231728 Query DataSets for GSM231728
Status Public on Aug 19, 2009
Title EFTF injected stage 15 Xenopus Laevis animal cap 1
Sample type RNA
 
Source name EFTF injected animal cap
Organism Xenopus laevis
Characteristics EFTF injected stage 15 Xenopus Laevis animal cap
Extracted molecule polyA RNA
Extraction protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Label Biotin Labelling
Label protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
 
Hybridization protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Scan protocol Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Description Carried out at SUNY-MAC (Syracuse, NY) per manufacturers
protocol (Affymetrix).
Data processing GeneSpring GX, ver. 7.3.1 (Agilent Technologies) was used for analysis. Cel file
data was pre-processed using RMA method with the average signal intensity normalized to primitive ectoderm isolated from Venus YFP RNA injected embryos in the case of EFTF-injected caps.
 
Submission date Sep 26, 2007
Last update date Aug 14, 2011
Contact name Michael E Zuber
E-mail(s) zuberm@upstate.edu
Organization name SUNY Upstate Medical University
Department Ophthalmology
Lab 5329 Weiskotten Hall Addition
Street address 766 Irving Ave
City Syracuse
State/province NY
ZIP/Postal code 13202
Country USA
 
Platform ID GPL1318
Series (1)
GSE9173 EFTF vs GFP Experiment

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
AFFX-BioB-5_at 693.57947
AFFX-BioB-M_at 1182.1909
AFFX-BioB-3_at 1065.6724
AFFX-BioC-5_at 1428.6646
AFFX-BioC-3_at 660.29
AFFX-BioDn-5_at 2543.0024
AFFX-BioDn-3_at 6279.578
AFFX-CreX-5_at 8881.521
AFFX-CreX-3_at 14121.562
AFFX-DapX-5_at 6.2306824
AFFX-DapX-M_at 6.212831
AFFX-DapX-3_at 6.6457577
AFFX-LysX-5_at 6.223114
AFFX-LysX-M_at 6.7973537
AFFX-LysX-3_at 7.4014864
AFFX-PheX-5_at 6.826566
AFFX-PheX-M_at 5.9793606
AFFX-PheX-3_at 8.399196
AFFX-ThrX-5_at 6.2126107
AFFX-ThrX-M_at 6.5259175

Total number of rows: 15611

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM231728.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM231728.CHP.gz 88.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap