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Sample GSM2292963 Query DataSets for GSM2292963
Status Public on Oct 11, 2016
Title D1_8w
Sample type SRA
Source name Skin
Organism Mus musculus
Characteristics strain: C57BL/6 x 129
tissue: Skin
age: 8 weeks
genotype: Stat3f/f K5cre
Extracted molecule total RNA
Extraction protocol Skin were removed, treated with RNALater, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 1500
Data processing Read alignment: TopHat2 v2.0.8 with default settings
expression level: Cufflinks v2.1.1 with default settings
Genome_build: mm9
Supplementary_files_format_and_content: FPKM
Submission date Aug 25, 2016
Last update date May 15, 2019
Contact name Kosuke Miyauchi
Organization name RIKEN Center for Integrative Medical Sciences
Street address 1-7-22 Suehiro-sho
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
Platform ID GPL18480
Series (1)
GSE86071 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Stat3f/f K5cre Skin Transcriptomes
BioSample SAMN05660803
SRA SRX2053684

Supplementary file Size Download File type/resource
GSM2292963_S00709.txt.gz 181.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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