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Sample GSM2278641 Query DataSets for GSM2278641
Status Public on Oct 30, 2016
Title miRNAs from PC30 patient
Sample type RNA
 
Source name serum miRNA (pancreatic cancer)
Organism Homo sapiens
Characteristics gender: F
age: 69
ca19-9: >37
Treatment protocol Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm.
Extracted molecule total RNA
Extraction protocol Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea) according to the manufacturer’s instructions, and the RNA was resuspended with 12 μL of RNase-free water and stored at -80°C until microarray or qRT-PCR
Label biotin
Label protocol RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA)
 
Hybridization protocol labelled RNA was heated to 99°C for 5 minutes and then to 45°C for 5 minutes. RNA-array hybridization was performed with agitation at 60 rotations per minute for 16 hours at 48°C on an Affymetrix® 450 Fluidics Station
Scan protocol The chips were washed and stained using a Genechip Fluidics Station 450 (Affymetrix). The chips were then scanned using an Affymetrix GCS 3000 scanner
Description serum miRNAs from PC patient
Data processing cel files were analysed and rma-normalized by using the Expression Console software
 
Submission date Aug 15, 2016
Last update date Oct 30, 2016
Contact name Jaehoon Lee
E-mail(s) jae.h.lee@lge.com
Phone 82-10-9879-9131
Organization name LG Electronics
Street address 38, Baumoe-ro
City Seoul
ZIP/Postal code 137-724
Country South Korea
 
Platform ID GPL19117
Series (1)
GSE85589 Expression data from pancreatic cancers patients and healthy controls

Data table header descriptions
ID_REF
VALUE log2-rma

Data table
ID_REF VALUE
MIMAT0000062_st 1.30431661
MIMAT0004481_st 0.651964934
MIMAT0010195_st 0.428193989
MIMAT0000063_st 5.588990261
MIMAT0004482_st 1.019299576
MIMAT0000064_st 3.601610895
MIMAT0026472_st 0.484176993
MIMAT0000065_st 1.205988792
MIMAT0004484_st 0.567628122
MIMAT0000066_st 0.617070777
MIMAT0004485_st 0.666330769
MIMAT0000067_st 1.197862023
MIMAT0004486_st 1.001532156
MIMAT0004487_st 0.714189005
MIMAT0000068_st 0.470304335
MIMAT0004488_st 1.174307385
MIMAT0000069_st 3.665599066
MIMAT0004489_st 0.58659843
MIMAT0000070_st 2.90872719
MIMAT0000071_st 0.633123365

Total number of rows: 2578

Table truncated, full table size 70 Kbytes.




Supplementary file Size Download File type/resource
GSM2278641_PC30.CEL.gz 660.2 Kb (ftp)(http) CEL
Processed data included within Sample table

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