NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2278615 Query DataSets for GSM2278615
Status Public on Oct 30, 2016
Title miRNAs from PC4 patient
Sample type RNA
 
Source name serum miRNA (pancreatic cancer)
Organism Homo sapiens
Characteristics gender: F
age: 66
ca19-9: <37
Treatment protocol Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm.
Extracted molecule total RNA
Extraction protocol Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea) according to the manufacturer’s instructions, and the RNA was resuspended with 12 μL of RNase-free water and stored at -80°C until microarray or qRT-PCR
Label biotin
Label protocol RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA)
 
Hybridization protocol labelled RNA was heated to 99°C for 5 minutes and then to 45°C for 5 minutes. RNA-array hybridization was performed with agitation at 60 rotations per minute for 16 hours at 48°C on an Affymetrix® 450 Fluidics Station
Scan protocol The chips were washed and stained using a Genechip Fluidics Station 450 (Affymetrix). The chips were then scanned using an Affymetrix GCS 3000 scanner
Description serum miRNAs from PC patient
Data processing cel files were analysed and rma-normalized by using the Expression Console software
 
Submission date Aug 15, 2016
Last update date Oct 30, 2016
Contact name Jaehoon Lee
E-mail(s) jae.h.lee@lge.com
Phone 82-10-9879-9131
Organization name LG Electronics
Street address 38, Baumoe-ro
City Seoul
ZIP/Postal code 137-724
Country South Korea
 
Platform ID GPL19117
Series (1)
GSE85589 Expression data from pancreatic cancers patients and healthy controls

Data table header descriptions
ID_REF
VALUE log2-rma

Data table
ID_REF VALUE
MIMAT0000062_st 1.23116415
MIMAT0004481_st 0.535332862
MIMAT0010195_st 1.248004704
MIMAT0000063_st 5.372768441
MIMAT0004482_st 0.858742083
MIMAT0000064_st 3.634441172
MIMAT0026472_st 0.623502393
MIMAT0000065_st 1.629729276
MIMAT0004484_st 0.584449283
MIMAT0000066_st 0.835387944
MIMAT0004485_st 0.606775162
MIMAT0000067_st 0.508544638
MIMAT0004486_st 0.681221837
MIMAT0004487_st 0.794889185
MIMAT0000068_st 0.633178825
MIMAT0004488_st 0.774223713
MIMAT0000069_st 4.395977144
MIMAT0004489_st 1.380850623
MIMAT0000070_st 3.931185042
MIMAT0000071_st 0.517533453

Total number of rows: 2578

Table truncated, full table size 70 Kbytes.




Supplementary file Size Download File type/resource
GSM2278615_PC4.CEL.gz 661.2 Kb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap