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Sample GSM2278613 Query DataSets for GSM2278613
Status Public on Oct 30, 2016
Title miRNAs from PC2 patient
Sample type RNA
Source name serum miRNA (pancreatic cancer)
Organism Homo sapiens
Characteristics gender: M
age: 61
ca19-9: >37
Treatment protocol Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm.
Extracted molecule total RNA
Extraction protocol Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea) according to the manufacturer’s instructions, and the RNA was resuspended with 12 μL of RNase-free water and stored at -80°C until microarray or qRT-PCR
Label biotin
Label protocol RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA)
Hybridization protocol labelled RNA was heated to 99°C for 5 minutes and then to 45°C for 5 minutes. RNA-array hybridization was performed with agitation at 60 rotations per minute for 16 hours at 48°C on an Affymetrix® 450 Fluidics Station
Scan protocol The chips were washed and stained using a Genechip Fluidics Station 450 (Affymetrix). The chips were then scanned using an Affymetrix GCS 3000 scanner
Description serum miRNAs from PC patient
Data processing cel files were analysed and rma-normalized by using the Expression Console software
Submission date Aug 15, 2016
Last update date Oct 30, 2016
Contact name Jaehoon Lee
Phone 82-10-9879-9131
Organization name LG Electronics
Street address 38, Baumoe-ro
City Seoul
ZIP/Postal code 137-724
Country South Korea
Platform ID GPL19117
Series (1)
GSE85589 Expression data from pancreatic cancers patients and healthy controls

Data table header descriptions
VALUE log2-rma

Data table
MIMAT0000062_st 1.727869791
MIMAT0004481_st 0.594229539
MIMAT0010195_st 1.41057885
MIMAT0000063_st 7.021726259
MIMAT0004482_st 1.181453631
MIMAT0000064_st 4.075586257
MIMAT0026472_st 0.315988168
MIMAT0000065_st 1.692450561
MIMAT0004484_st 1.097088829
MIMAT0000066_st 0.74829688
MIMAT0004485_st 0.753007514
MIMAT0000067_st 0.819647603
MIMAT0004486_st 0.372937589
MIMAT0004487_st 0.316158559
MIMAT0000068_st 1.228890755
MIMAT0004488_st 0.748579074
MIMAT0000069_st 3.863133745
MIMAT0004489_st 1.482492498
MIMAT0000070_st 4.321465188
MIMAT0000071_st 0.509764275

Total number of rows: 2578

Table truncated, full table size 70 Kbytes.

Supplementary file Size Download File type/resource
GSM2278613_PC2.CEL.gz 697.5 Kb (ftp)(http) CEL
Processed data included within Sample table

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