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GEO accession:
Sample GSM22495
Query DataSets for GSM22495
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1206
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1206 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1206;Tumor.type=D;Size=4.1;Grade=3;Nodes=0/15;ER=Pos;PR=Neg;HER2=Neg;Age=84;DFS=56;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.8568533
3665.0
3526.0
0.552155527717411
6459
0.2825893
707.0
1080.0
1.2163758248986523
16790
-0.0614633
183.0
186.0
0.9582919596764025
4210
-0.0329763
119.5
122.5
0.9774019463844454
13392
0.3008913
3493.0
8246.0
1.2319048270915487
1575
0.0139533
104.0
110.0
1.0097180999427453
9300
0.3592403
136.0
184.0
1.2827495592003513
5306
0.3220383
121.0
159.0
1.2500954101703035
4514
0.2488133
98.0
122.0
1.1882290611774757
8664
1.0247703
118.0
254.0
2.0346356539494743
1645
3.4891353
189.0
2558.0
11.22882719243144
13828
1.9689943
119.0
501.0
3.914949917923965
3944
0.4526623
139.0
201.0
1.3685634661395154
500
-0.3621143
1869.0
2212.0
0.7780239186835691
21226
0.7954633
183.5
343.0
1.7356341259252828
15545
-1.2062503
1713.0
1018.0
0.4333935662930371
6346
-0.0855283
309.0
318.0
0.9424395940527993
4381
0.3383773
113.0
150.0
1.2643336715754003
3385
0.9133183
3950.0
14986.0
1.8833717014919815
19553
3.5490733
101.5
1313.5
11.705164200202292
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
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