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GEO accession:
Sample GSM22486
Query DataSets for GSM22486
Status
Public on Jun 07, 2004
Title
whole tissue section from case 871
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 871 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=871;Tumor.type=D;Size=4;Grade=3;Nodes=0/16;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=6;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.0088593
3865.0
9734.0
1.0061595068433176
6459
0.8476793
1001.0
3181.0
1.7996029403193776
16790
-0.2277433
231.0
201.0
0.8539695934187942
4210
0.5423343
192.5
291.0
1.456327152257121
13392
0.5549453
3714.0
14188.5
1.469112931353256
1575
0.0680513
112.0
106.0
1.0482998244263029
9300
0.6696413
311.0
581.5
1.5906769680776933
5306
-0.0411503
173.0
163.5
0.9718798031404838
4514
-0.0471023
133.0
119.0
0.9678787313731052
8664
1.2774583
163.5
420.0
2.424115497285553
1645
0.2371753
267.5
344.5
1.1786823335879628
13828
0.9960073
169.0
352.0
1.9944722321178188
3944
0.2339023
170.0
197.5
1.1760114179495558
500
-1.0616973
2555.0
2377.0
0.4790682945872662
21226
0.2500273
176.0
208.5
1.1892296795677773
15545
-2.4221243
1522.5
389.5
0.18658123669362392
6346
0.4403163
460.5
800.5
1.3569015954583132
4381
0.1554313
116.0
118.0
1.113754249984688
3385
0.7139033
4908.5
21874.0
1.6402354376325263
19553
0.1312453
141.0
146.0
1.0952387195506612
Total number of rows:
22575
Table truncated, full table size
1065 Kbytes
.
Supplementary data files not provided
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