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GEO accession:
Sample GSM22481
Query DataSets for GSM22481
Status
Public on Jun 07, 2004
Title
whole tissue section from case 829
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 829 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=829;Tumor.type=D;Size=1.2;Grade=2;Nodes=0/9;ER=Pos;PR=Pos;HER2=Neg ;Age=69;DFS=136;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.2444923
3506.0
2446.0
0.422056559356841
6459
-0.1362673
695.5
777.0
0.9098701626316253
16790
-0.8270703
200.0
113.0
0.563672808874019
4210
-0.2276373
136.0
115.0
0.8540328239915267
13392
0.0553063
3367.0
6286.0
1.039079248045287
1575
0.0448423
103.0
104.0
1.0315700374276793
9300
0.3380593
203.0
267.0
1.2640548609299493
5306
-0.0222483
131.0
128.0
0.9846968817180244
4514
-0.2723753
147.0
121.0
0.8279554170323484
8664
0.3847853
130.0
170.0
1.305665141379917
1645
0.5592463
192.0
295.0
1.4734993883040068
13828
0.6052033
173.0
272.0
1.5211924748692196
3944
-0.2579923
124.0
102.0
0.8362511442553225
500
-0.2226713
1818.0
2415.0
0.8569776025026117
21226
-0.3745753
149.5
114.5
0.771332707531948
15545
-1.5347393
1487.0
670.0
0.3451418419140515
6346
0.2593733
355.0
471.5
1.196958779440926
4381
0.0709203
103.5
106.5
1.050386053666985
3385
0.2960313
3973.0
9049.0
1.2277624835380714
19553
0.2446663
113.5
133.0
1.1848186119200017
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
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