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GEO accession:
Sample GSM22474
Query DataSets for GSM22474
Status
Public on Jun 07, 2004
Title
whole tissue section from case 655
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 655 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=655;Tumor.type=D;Size=2;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=143;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.5211473
3092.5
3768.0
0.696817785308557
6459
0.1674773
773.0
1141.0
1.1230925230405866
16790
-0.5374623
188.0
186.0
0.6889816993696135
4210
0.0850413
146.0
223.0
1.0607181494629314
13392
0.4137853
3352.0
8811.0
1.3321761619445507
1575
0.4509423
116.5
231.0
1.3669321310349822
9300
0.8862433
167.0
431.5
1.8483569550852001
5306
0.2153943
140.0
234.0
1.161021098501821
4514
0.1792603
102.0
170.0
1.1323030073989282
8664
0.5535933
126.0
266.0
1.4677369209712818
1645
-0.1477453
161.0
209.0
0.9026603239957234
13828
-0.1423763
130.0
172.0
0.9060257360290311
3944
0.5560573
201.5
411.5
1.4702451403856012
500
-0.0984653
1810.5
2652.0
0.9340261365673289
21226
-0.1739723
173.0
219.5
0.8863986111424939
15545
-1.6708913
1546.0
641.5
0.3140592992142243
6346
1.1062343
345.0
980.0
2.152829443337814
4381
0.5822603
312.0
625.5
1.4971925771034011
3385
0.5485473
3580.0
10536.0
1.4626121453119556
19553
0.4127803
192.0
358.0
1.3312489744497076
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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