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GEO accession:
Sample GSM22458
Query DataSets for GSM22458
Status
Public on Jun 07, 2004
Title
whole tissue section from case 297
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 297 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=297;Tumor.type=D;Size=0.8;Grade=2;Nodes=1/16;ER=Pos;PR=Pos;HER2=ND;Age=66;DFS=169;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.2953143
2796.0
1835.0
0.4074473644144815
6459
0.0506253
734.0
1003.0
1.0357135934057713
16790
-1.0531073
171.0
103.5
0.48192914839100154
4210
-0.2130603
108.0
115.0
0.8627055362098944
13392
0.8286303
2829.0
9670.0
1.7759979068275107
1575
0.2547223
99.0
147.0
1.1931054708534166
9300
0.3076833
152.0
242.0
1.2377186650241911
5306
0.6429263
150.5
304.0
1.5614928368532737
4514
0.0954063
110.0
147.0
1.068365979158617
8664
-0.0485883
116.5
141.0
0.9668822408247946
1645
2.3091293
161.0
1048.5
4.955836580168324
13828
0.8050473
118.0
264.0
1.7472023217374932
3944
0.0508593
114.0
148.0
1.0358818618813779
500
-0.0435903
1544.0
2330.0
0.9702377918638092
21226
0.6090563
166.0
329.0
1.5252605283732241
15545
-0.6560963
1258.0
1111.0
0.6345930986591742
6346
-0.6852553
314.0
255.0
0.6218960633196928
4381
0.6044033
122.0
237.0
1.5203496947238968
3385
1.1009443
3252.0
13907.0
2.1449506992402707
19553
1.5176603
587.0
2334.0
2.863262439225388
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
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