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GEO accession:
Sample GSM22456
Query DataSets for GSM22456
Status
Public on Jun 07, 2004
Title
whole tissue section from case 289
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 289 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=289;Tumor.type=D;Size=3;Grade=2;Nodes=0/15;ER=Pos;PR=Pos;HER2=Neg;Age=75;DFS=63;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.0082263
3931.0
1975.0
0.49715726275622296
6459
-0.9133673
923.0
447.0
0.5309445319534192
16790
-0.4614983
208.0
151.0
0.7262319646456712
4210
-0.0385073
130.0
128.0
0.9736620435741125
13392
0.4403613
3499.0
5179.0
1.3569434514303924
1575
0.4066453
126.5
169.0
1.3255995592456116
9300
0.2405503
184.0
216.0
1.1814428778061399
5306
0.1844983
159.0
181.0
1.1364216359387318
4514
-0.1424503
146.0
133.5
0.9059795616556436
8664
1.3907123
137.0
355.0
2.622080329372192
1645
0.2204303
227.0
260.0
1.1650809290370432
13828
-0.0125963
142.0
142.0
0.9913072021343156
3944
-0.1999343
130.5
115.0
0.8705902181566183
500
0.7109183
2202.0
3653.0
1.6368448481696114
21226
-0.0432893
200.0
193.0
0.9704402200775865
15545
-1.9302773
1693.5
399.5
0.26237875810230965
6346
1.3506443
387.0
906.0
2.5502595158280457
4381
0.4311763
113.0
154.0
1.3483324090111681
3385
0.3378303
4508.0
6459.0
1.2638540236139768
19553
0.5832173
140.0
210.0
1.498186178102878
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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