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GEO accession:
Sample GSM22449
Query DataSets for GSM22449
Status
Public on Jun 07, 2004
Title
whole tissue section from case 25
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 25 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=25;Tumor.type=D;Size=3.5;Grade=2;Nodes=0/9;ER=Neg;PR=Pos;HER2=Neg;Age=62;DFS=75;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4273903
3605.0
4848.0
1.3447988904299584
6459
-1.0998493
658.0
307.0
0.46656534954407297
16790
-0.0424353
207.0
201.0
0.9710144927536232
4210
0.0387323
147.0
151.0
1.0272108843537415
13392
1.3151553
3416.0
8500.0
2.488290398126464
1575
0.3301493
140.0
176.0
1.2571428571428571
9300
0.3835733
197.0
257.0
1.3045685279187818
5306
0.3708383
174.0
225.0
1.293103448275862
4514
0.2085873
157.5
182.0
1.1555555555555554
8664
0.6555013
153.0
241.0
1.5751633986928104
1645
-0.1029573
196.0
182.5
0.9311224489795918
13828
0.3886973
152.0
199.0
1.3092105263157894
3944
0.1510663
154.0
171.0
1.1103896103896105
500
0.4537553
1852.0
2536.5
1.3696004319654427
21226
-0.0256653
198.5
195.0
0.982367758186398
15545
-2.6129773
1456.0
238.0
0.16346153846153846
6346
1.0731503
360.5
758.5
2.104022191400832
4381
0.6562213
158.0
249.0
1.5759493670886076
3385
1.8343603
3735.0
13319.5
3.566131191432396
19553
0.9742113
254.0
499.0
1.9645669291338583
Total number of rows:
22575
Table truncated, full table size
1049 Kbytes
.
Supplementary data files not provided
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