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GEO accession:
Sample GSM22409
Query DataSets for GSM22409
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1125
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1125 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1125;Tumor.type=D;Size=2.6;Grade=2;Nodes=0/18;ER=Pos;PR=Neg;HER2=Neg;Age=54;DFS=123;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3696583
4546.0
4773.0
1.2920464179390605
6459
-0.7401813
897.0
202.0
0.5986644451131189
16790
0.8870233
609.0
438.0
1.84935661828461
4210
0.2972003
129.5
87.5
1.2287572569876763
13392
-0.1258693
3601.0
2332.0
0.9164515657235635
1575
0.5048253
227.0
137.0
1.4189509247726653
9300
0.3642853
163.5
103.0
1.287243615199663
5306
-0.0789733
152.0
78.0
0.9467312432161022
4514
-0.0412133
139.0
76.0
0.97183721106574
8664
-0.1506083
128.0
69.0
0.9008707009475887
1645
0.8440683
709.0
512.0
1.7951043014662682
13828
0.1312823
125.5
79.0
1.0952666771489785
3944
-0.0453243
125.0
72.0
0.9690722435600586
500
-0.6206653
2326.5
833.0
0.6503710118158268
21226
0.4957843
173.0
114.5
1.4100868589159925
15545
-0.5862173
1707.0
531.5
0.666087313642542
6346
0.2016563
360.5
161.0
1.15001727813541
4381
0.1826113
108.0
75.5
1.1349357407247809
3385
-1.5218783
4651.0
1042.0
0.34823224256354046
19553
0.4247173
157.0
104.0
1.3423090727566844
Total number of rows:
22575
Table truncated, full table size
1053 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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