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GEO accession:
Sample GSM22395
Query DataSets for GSM22395
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 772
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 772 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=772;Tumor.type=D;Size=2.5;Grade=2;Nodes=0/18;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.1251933
2978.0
4764.0
0.9168814731766872
6459
0.4786173
595.0
798.0
1.3934068453113202
16790
-0.6739443
153.0
82.0
0.6267907893995179
4210
0.6824163
299.0
411.0
1.6048254899340613
13392
-0.3886993
2266.0
2619.5
0.7638181127292574
1575
0.1956033
119.0
116.0
1.1452027005367853
9300
0.4182323
145.0
162.0
1.3362890722673555
5306
0.2655693
136.5
138.0
1.2021100182565043
4514
-0.0324063
116.0
97.5
0.9777879772589766
8664
-0.0369613
125.0
104.0
0.9747061799169017
1645
0.3525803
147.5
157.5
1.276841808781185
13828
0.4982303
120.0
143.0
1.4124792872723875
3944
0.1094743
122.5
112.5
1.078835123898186
500
-0.6085063
1529.5
1247.5
0.6558754567403647
21226
1.0997933
187.0
335.0
2.1432399790737944
15545
-0.4777833
1066.0
820.0
0.718080437008527
6346
-0.2597343
254.0
176.5
0.8352419696983493
4381
0.3019453
107.0
113.0
1.2328051665762851
3385
-1.0329383
2758.5
2016.5
0.48871380805329795
19553
0.0971383
292.5
263.0
1.069649450554863
Total number of rows:
22575
Table truncated, full table size
1054 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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