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GEO accession:
Sample GSM22387
Query DataSets for GSM22387
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 638
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 638 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=638;Tumor.type=D;Size=2;Grade=2;Nodes=1/24;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=148;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.0336803
3226.5
2454.5
0.48846258251044106
6459
0.7038613
790.0
1340.0
1.6288578671029796
16790
0.6075273
150.5
220.0
1.5236455414751906
4210
0.0366053
89.5
103.0
1.0256974676459465
13392
0.7816233
2415.5
7470.0
1.7190638763772377
1575
0.2720233
104.0
133.0
1.2075001157928658
9300
0.2091353
125.0
147.5
1.1559944740060142
5306
0.2976993
113.0
144.0
1.2291828035304555
4514
0.1768003
83.0
106.0
1.1303739946154574
8664
-0.2493823
102.0
95.5
0.8412568179969077
1645
0.4644283
156.0
207.0
1.3797698786767538
13828
0.2822363
90.0
120.0
1.2160784146666597
3944
0.0106683
95.0
106.0
1.0074221752749173
500
-0.5045223
1651.5
1444.0
0.7048937723897293
21226
0.4904233
170.0
226.0
1.4048570567522822
15545
-3.2632893
1146.0
106.0
0.1041482545133163
6346
-0.3380683
312.0
223.5
0.7911002824041623
4381
0.1558863
92.0
113.0
1.1141056256681
3385
-1.2548913
2964.0
1781.0
0.4190251666399787
19553
2.5288623
97.0
518.0
5.771162838104762
Total number of rows:
22575
Table truncated, full table size
1053 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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