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GEO accession:
Sample GSM22385
Query DataSets for GSM22385
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 607
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 607 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=607;Tumor.type=D;Size=1.2;Grade=2;Nodes=5/14;ER=Pos;PR=Pos;HER2=Neg;Age=76;DFS=114;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
1.0177253
3481.0
7512.0
2.024724023864773
6459
0.0156933
772.0
439.0
1.0109367711495383
16790
1.6092583
159.0
333.0
3.050948301788136
4210
0.0217733
120.0
116.0
1.0152066094041
13392
-1.4032303
2605.5
719.0
0.3780815940519113
1575
0.4030273
109.0
135.0
1.3222791336220312
9300
0.2468243
137.0
141.0
1.186591876331855
5306
0.7681653
111.5
166.5
1.7031024095339569
4514
0.4614373
101.5
134.0
1.376912399505958
8664
-0.2859533
112.0
95.0
0.8201998497714813
1645
0.1487633
170.5
152.0
1.10861838267528
13828
0.2369493
100.0
118.0
1.1784979082327651
3944
0.1834443
114.0
123.0
1.1355916889612265
500
0.3580233
1902.0
1972.0
1.2816684224074777
21226
0.9144173
164.0
228.0
1.8848067870346872
15545
-2.2068463
1110.0
140.0
0.21660730416490948
6346
-0.4795223
368.0
175.0
0.7172150832409327
4381
0.7467523
121.0
172.5
1.6780111435454326
3385
-0.6493413
3137.0
1718.0
0.6375714761376098
19553
2.5326743
96.0
406.0
5.786433856570216
Total number of rows:
22575
Table truncated, full table size
1052 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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