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GEO accession:
Sample GSM22378
Query DataSets for GSM22378
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 356
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 356 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=356;Tumor.type=D;Size=1;Grade=2;Nodes=2/20;ER=Pos (<10%);PR=Neg;HER2=Pos;Age=58;DFS=24;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.7647273
4631.0
1548.0
0.588564732224517
6459
-1.0220193
876.0
189.5
0.4924268704179547
16790
-0.5213413
235.0
99.0
0.6967239374042267
4210
0.8033183
187.0
182.0
1.7451095270975072
13392
0.3671993
4015.5
3209.5
1.2898457937241896
1575
0.4205483
175.0
140.0
1.3384360335376306
9300
0.4009443
244.0
172.5
1.320371940911913
5306
0.7200433
183.0
171.0
1.647230785743129
4514
0.1181503
155.0
109.5
1.0853418639338714
8664
-0.1871273
168.0
97.0
0.8783534046398604
1645
0.0718043
266.0
151.0
1.0510301170182277
13828
0.3039853
185.5
136.0
1.2345499392376387
3944
0.5014943
246.0
184.0
1.4156788404932028
500
0.2539813
2386.0
1457.0
1.1924927906261058
21226
0.1572803
254.5
154.0
1.1151826922732078
15545
-0.4539793
1839.0
591.0
0.7300265547750099
6346
-0.2686573
432.0
174.0
0.8300918744665586
4381
0.4857133
143.0
128.0
1.400278023790393
3385
-0.7597903
4563.5
1523.5
0.5905824436670144
19553
0.4603303
167.0
139.0
1.3758565660476048
Total number of rows:
22575
Table truncated, full table size
1057 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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