GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22365
Query DataSets for GSM22365
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 25
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 25 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=25;Tumor.type=D;Size=3.5;Grade=2;Nodes=0/9;ER=Neg;PR=Pos;HER2=Neg;Age=62;DFS=75;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3150233
3162.5
2155.5
0.8038380883463055
6459
-1.3340763
653.0
127.0
0.396645924408693
16790
-0.4834073
169.0
79.0
0.7152865631140825
4210
1.4616233
174.0
250.0
2.7541805148885423
13392
0.5808103
2710.0
3647.0
1.495688765125304
1575
0.1243453
154.5
105.0
1.0900128024688838
9300
0.6205953
164.0
145.0
1.5375089317839132
5306
0.1809053
140.0
102.0
1.1335946950432692
4514
0.1752453
143.0
103.0
1.1291564355441588
8664
-0.0925703
126.0
82.5
0.93785089635721
1645
0.1315763
184.0
118.0
1.0954898406321227
13828
0.1005263
115.0
87.0
1.072164409552698
3944
-0.0732103
129.0
84.5
0.9505209152344395
500
0.5469203
1870.0
2099.5
1.460963569183967
21226
1.0122073
181.0
196.0
2.016994460234322
15545
-2.4581563
1151.5
101.0
0.18197906758834323
6346
1.7374733
356.0
571.0
3.334506522762613
4381
1.5639853
345.0
489.0
2.9566946574346726
3385
-1.7012023
2879.5
590.0
0.3075298526425248
19553
1.8612423
256.0
448.5
3.633203694589003
Total number of rows:
22575
Table truncated, full table size
1051 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
