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Sample GSM2195815 Query DataSets for GSM2195815
Status Public on Jun 22, 2016
Title DNase-seq from neural tube (ENCLB123ELX)
Sample type SRA
 
Source name Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)
Organism Mus musculus
Characteristics tissue_type: neural tube
biomaterial_type: tissue
biosample encode accession: ENCBS427RVU (SAMN05202103)
age: 11.5 day
dev stage: embryonic
donor_id: ENCDO956IXV
Sex: pooled male and female
health state: healthy
lab: John Stamatoyannopoulos, UW
link: ENCBS427RVU at ENCODE; https://www.encodeproject.org/ENCBS427RVU/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule genomic DNA
Extraction protocol other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR312QVY/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 11.5 day mixed embryonic mouse neural tube
experiment encode accession: ENCSR312QVY
assay title: DNase-seq
assembly: mm10
encode release date: 2015-09-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123ELX
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500,Illumina NextSeq 500
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (1)
GSE83171 DNase-seq from neural tube (ENCSR312QVY)
Relations
BioSample SAMN05202103
SRA SRX1836026
Named Annotation GSM2195815_ENCFF761FAV_signal_of_unique_reads_mm10.bigWig
Named Annotation GSM2195815_ENCFF677XBR_hotspots_mm10.bed.gz
Named Annotation GSM2195815_ENCFF827JHO_peaks_mm10.bed.gz

Supplementary file Size Download File type/resource
GSM2195815_ENCFF015DEL_peaks_mm10.bigBed 2.0 Mb (ftp)(http) BIGBED
GSM2195815_ENCFF677XBR_hotspots_mm10.bed.gz 1.8 Mb (ftp)(http) BED
GSM2195815_ENCFF761FAV_signal_of_unique_reads_mm10.bigWig 493.5 Mb (ftp)(http) BIGWIG
GSM2195815_ENCFF827JHO_peaks_mm10.bed.gz 1.3 Mb (ftp)(http) BED
GSM2195815_ENCFF971UMC_hotspots_mm10.bigBed 2.7 Mb (ftp)(http) BIGBED
GSM2195815_ENCLB123ELX_README.txt.gz 737 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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