GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM2195803

Query DataSets for GSM2195803

Status

Public on Jun 22, 2016

Title

DNase-seq from kidney (ENCLB995XTX)

Sample type

SRA

Source name

Mus musculus strain B6NCrl kidney tissue postnatal (0 days)

Organism

Mus musculus

Characteristics

tissue_type: kidney
biomaterial_type: tissue
biosample encode accession: ENCBS883GDG (SAMN05202111)
age: 0 day
dev stage: postnatal
donor_id: ENCDO956IXV
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS883GDG at ENCODE; https://www.encodeproject.org/ENCBS883GDG/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/

Extracted molecule

genomic DNA

Extraction protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina NextSeq 500

Description

https://www.encodeproject.org/experiments/ENCSR066DPD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR066DPD
assay title: DNase-seq
assembly: mm10-minimal
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB995XTX
instrument models: Illumina NextSeq 500,Illumina HiSeq 2500

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Jun 09, 2016

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL19057

Series (1)

GSE83164

DNase-seq from kidney (ENCSR066DPD)

Relations

BioSample

SAMN05202111

SRA

SRX1836016

Named Annotation

GSM2195803_ENCFF829ZOV_signal_of_unique_reads_mm10-minimal.bigWig

Named Annotation

GSM2195803_ENCFF733CTE_peaks_mm10-minimal.bed.gz

Supplementary file	Size	Download	File type/resource
GSM2195803_ENCFF194KOG_peaks_mm10-minimal.bigBed	5.1 Mb	(ftp)(http)	BIGBED
GSM2195803_ENCFF733CTE_peaks_mm10-minimal.bed.gz	3.3 Mb	(ftp)(http)	BED
GSM2195803_ENCFF829ZOV_signal_of_unique_reads_mm10-minimal.bigWig	334.5 Mb	(ftp)(http)	BIGWIG
GSM2195803_ENCLB995XTX_README.txt.gz	558 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file