NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2195802 Query DataSets for GSM2195802
Status Public on Jun 22, 2016
Title DNase-seq from kidney (ENCLB058DOR)
Sample type SRA
 
Source name Mus musculus strain B6NCrl kidney tissue postnatal (0 days)
Organism Mus musculus
Characteristics tissue_type: kidney
biomaterial_type: tissue
biosample encode accession: ENCBS794MWN (SAMN05202110)
age: 0 day
dev stage: postnatal
donor_id: ENCDO956IXV
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS794MWN at ENCODE; https://www.encodeproject.org/ENCBS794MWN/
link: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/
Extracted molecule genomic DNA
Extraction protocol other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina NextSeq 500
 
Description https://www.encodeproject.org/experiments/ENCSR066DPD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR066DPD
assay title: DNase-seq
assembly: mm10-minimal
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB058DOR
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Jun 09, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL19057
Series (1)
GSE83164 DNase-seq from kidney (ENCSR066DPD)
Relations
BioSample SAMN05202110
SRA SRX1836015
Named Annotation GSM2195802_ENCFF292LVM_signal_of_unique_reads_mm10-minimal.bigWig
Named Annotation GSM2195802_ENCFF930BBJ_peaks_mm10-minimal.bed.gz

Supplementary file Size Download File type/resource
GSM2195802_ENCFF292LVM_signal_of_unique_reads_mm10-minimal.bigWig 332.0 Mb (ftp)(http) BIGWIG
GSM2195802_ENCFF916MGC_peaks_mm10-minimal.bigBed 5.3 Mb (ftp)(http) BIGBED
GSM2195802_ENCFF930BBJ_peaks_mm10-minimal.bed.gz 3.4 Mb (ftp)(http) BED
GSM2195802_ENCLB058DOR_README.txt.gz 560 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap