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Sample GSM2176 Query DataSets for GSM2176
Status Public on Jun 27, 2002
Title Polio Polysomes 3 hours
Sample type RNA
 
Channel 1
Source name Mock
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Polio
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Infection
Subcategory: Polio virus
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = nci536
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (1)
GSE62 mRNAs translated at eIF4F

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1883 183 574 83 491 722 122 844 .25 0 -.585 0 0 2.205 1.5 .454 .667 .5 6 15 63 72 -.585
2 1869 246 607 102 505 742 150 892 .27 0 -.714 0 0 2.412 1.64 .415 .61 .57 6 15 71 80 -.714
3 1860 236 563 84 479 704 123 827 .05 0 -.94 0 0 2.81 1.919 .356 .521 .1 6 15 80 89 -.94
4 1904 245 580 91 489 719 133 852 .19 0 -.881 0 0 2.692 1.842 .371 .543 .46 6 15 89 98 -.881
5 1896 274 583 101 482 708 149 857 .4 0 -.879 0 0 2.713 1.839 .369 .544 .85 6 15 97 106 -.879
6 1825 220 574 88 486 714 130 844 .24 0 -.759 0 0 2.5 1.692 .4 .591 .6 6 15 106 115 -.759
7 1795 199 581 96 485 713 141 854 .25 0 -.497 0 0 2.073 1.411 .482 .709 .41 6 15 115 124 -.497
8 1783 247 589 94 495 727 139 866 .57 0 -.829 0 0 2.628 1.777 .381 .563 1.22 6 15 124 133 -.829
9 1720 173 564 81 483 710 119 829 .06 0 -.54 0 0 2.136 1.454 .468 .688 .09 6 15 132 141 -.54
10 1781 288 797 302 495 727 445 1172 .79 0 .628 0 0 .954 .647 1.049 1.545 .45 6 15 141 150 .628
11 1757 438 591 101 490 720 149 869 .24 0 -1.556 0 0 4.337 2.94 .231 .34 .82 6 15 150 159 -1.556
12 1585 424 567 80 487 716 117 833 .29 0 -1.858 0 0 5.3 3.624 .189 .276 1.38 6 15 159 168 -1.858
13 1585 344 636 158 478 702 233 935 .93 0 -.562 0 0 2.177 1.476 .459 .677 1.5 6 15 167 176 -.562
14 1445 182 620 129 491 722 189 911 -.27 0 .054 0 0 1.411 .963 .709 1.038 -.26 6 15 176 185 .054
15 1527 453 793 255 538 791 375 1166 .9 0 -.273 0 0 1.776 1.208 .563 .828 .92 6 15 185 194 -.273
16 1498 193 572 80 492 723 118 841 .21 0 -.71 0 0 2.413 1.636 .415 .611 .39 6 15 194 203 -.71
17 1434 160 556 69 487 716 101 817 0 0 -.664 0 0 2.319 1.584 .431 .631 -.01 6 15 202 211 -.664
18 1417 139 552 75 477 701 110 811 .14 0 -.338 0 0 1.853 1.264 .54 .791 .19 6 15 211 220 -.338
19 1345 159 542 83 459 675 122 797 -.07 0 -.382 0 0 1.916 1.303 .522 .767 -.1 6 15 220 229 -.382
20 1327 137 537 70 467 686 103 789 -.1 0 -.412 0 0 1.957 1.33 .511 .752 -.16 6 15 229 238 -.412

Total number of rows: 9984

Table truncated, full table size 1002 Kbytes.




Supplementary data files not provided
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