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Sample GSM2165 Query DataSets for GSM2165
Status Public on Jun 27, 2002
Title Serum 06
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 6 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 416
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 557 105 379 71 308 421 98 519 .14 0 -.1 0 0 1.479 1.071 .676 .933 .21 31 39 64 72 -.1
2 565 90 376 58 318 435 80 515 .1 0 -.17 0 0 1.552 1.125 .644 .889 .12 31 39 72 80 -.17
3 592 72 376 50 326 446 69 515 .07 0 -.061 0 0 1.44 1.043 .694 .958 .09 31 39 81 89 -.061
4 592 96 369 58 311 426 79 505 0 -.281 0 0 1.655 1.215 .604 .823 31 39 90 98 -.281
5 615 85 367 59 308 421 81 502 .4 0 -.07 0 0 1.441 1.049 .694 .953 .56 31 39 99 107 -.07
6 588 102 367 60 307 420 82 502 .41 0 -.315 0 0 1.7 1.244 .588 .804 .61 31 39 107 115 -.315
7 619 81 359 66 293 401 90 491 .11 0 .152 0 0 1.227 .9 .815 1.111 .12 31 39 116 124 .152
8 580 108 374 57 317 434 78 512 .05 0 -.469 0 0 1.895 1.385 .528 .722 .07 31 39 125 133 -.469
9 580 72 387 66 321 439 91 530 .12 0 .338 0 0 1.091 .791 .917 1.264 .09 31 39 134 142 .338
10 589 434 592 251 341 467 343 810 .96 0 -.339 0 0 1.729 1.265 .578 .79 1.43 31 39 142 150 -.339
11 548 88 406 55 351 480 76 556 .27 0 -.212 0 0 1.6 1.158 .625 .864 .25 31 39 151 159 -.212
12 564 98 434 90 344 471 123 594 .47 0 .328 0 0 1.089 .797 .918 1.255 .31 31 39 160 168 .328
13 554 128 422 105 317 434 144 578 .65 0 .17 0 0 1.219 .889 .82 1.125 .76 31 39 169 177 .17
14 571 135 409 62 347 475 85 560 0 -.667 0 0 2.177 1.588 .459 .63 31 39 177 185 -.667
15 595 378 646 273 373 510 374 884 .9 0 -.015 0 0 1.385 1.011 .722 .989 1.27 31 39 186 194 -.015
16 548 85 416 58 358 490 79 569 0 -.106 0 0 1.466 1.076 .682 .929 31 39 195 203 -.106
17 552 81 406 54 352 482 74 556 0 -.13 0 0 1.5 1.095 .667 .914 31 39 204 212 -.13
18 550 74 421 59 362 495 81 576 0 .13 0 0 1.254 .914 .797 1.095 31 39 212 220 .13
19 542 95 406 62 344 471 85 556 .18 0 -.16 0 0 1.532 1.118 .653 .895 .2 31 39 221 229 -.16
20 572 72 412 65 347 475 89 564 .2 0 .306 0 0 1.108 .809 .903 1.236 .17 31 39 230 238 .306

Total number of rows: 9984

Table truncated, full table size 974 Kbytes.




Supplementary data files not provided

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