NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2164 Query DataSets for GSM2164
Status Public on Jun 27, 2002
Title Serum 04
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 4 hours
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 415
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 601 90 824 126 698 758 137 895 0 .606 0 0 .714 .657 1.4 1.522 33 41 61 69 .606
2 597 165 811 143 668 726 155 881 0 -.09 0 0 1.154 1.065 .867 .939 33 41 69 77 -.09
3 632 318 726 115 611 664 125 789 0 -1.347 0 0 2.765 2.544 .362 .393 33 41 78 86 -1.347
4 588 256 689 137 552 600 148 748 0 -.791 0 0 1.869 1.73 .535 .578 33 41 87 95 -.791
5 619 99 749 126 623 677 137 814 0 .469 0 0 .786 .723 1.273 1.384 33 41 96 104 .469
6 600 157 757 97 660 717 105 822 0 -.58 0 0 1.619 1.495 .618 .669 33 41 104 112 -.58
7 567 106 872 239 633 688 259 947 .17 0 1.289 0 0 .444 .409 2.255 2.443 .07 33 41 113 121 1.289
8 619 295 861 184 677 735 200 935 0 -.561 0 0 1.603 1.475 .624 .678 33 41 122 130 -.561
9 687 141 712 100 612 665 108 773 0 -.385 0 0 1.41 1.306 .709 .766 33 41 131 139 -.385
10 645 577 1109 497 612 665 540 1205 .97 0 -.096 0 0 1.161 1.069 .861 .936 1.06 33 41 139 147 -.096
11 634 134 752 121 631 685 132 817 .11 0 -.022 0 0 1.107 1.015 .903 .985 .09 33 41 148 156 -.022
12 597 174 806 173 633 688 188 876 0 .112 0 0 1.006 .926 .994 1.08 33 41 157 165 .112
13 645 107 702 119 583 633 130 763 .37 0 .281 0 0 .899 .823 1.112 1.215 .36 33 41 166 174 .281
14 647 202 712 108 604 656 117 773 .16 0 -.788 0 0 1.87 1.726 .535 .579 .33 33 41 174 182 -.788
15 645 428 1046 442 604 656 480 1136 .89 0 .165 0 0 .968 .892 1.033 1.121 .9 33 41 183 191 .165
16 609 139 793 144 649 705 156 861 0 .166 0 0 .965 .891 1.036 1.122 33 41 192 200 .166
17 604 280 758 133 625 679 144 823 0 -.959 0 0 2.105 1.944 .475 .514 33 41 201 209 -.959
18 638 311 712 117 595 646 127 773 .27 0 -1.292 0 0 2.658 2.449 .376 .408 .95 33 41 209 217 -1.292
19 609 89 723 87 636 691 94 785 .02 0 .079 0 0 1.023 .947 .978 1.056 .02 33 41 218 226 .079
20 618 104 713 98 615 668 107 775 .46 0 .041 0 0 1.061 .972 .942 1.029 .52 33 41 227 235 .041

Total number of rows: 9984

Table truncated, full table size 976 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap