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Sample GSM2162 Query DataSets for GSM2162
Status Public on Jun 27, 2002
Title Serum 01
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 1 hour
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 412
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1226 146 651 80 571 732 102 834 .3 0 -.517 0 0 1.825 1.431 .548 .699 .6 26 34 56 64 -.517
2 1212 210 644 86 558 715 110 825 .27 0 -.933 0 0 2.442 1.909 .41 .524 .73 26 34 64 72 -.933
3 1191 200 647 79 568 728 101 829 .29 0 -.986 0 0 2.532 1.98 .395 .505 .74 26 34 73 81 -.986
4 1266 298 614 90 524 671 116 787 0 -1.361 0 0 3.311 2.569 .302 .389 26 34 82 90 -1.361
5 1188 390 651 81 570 730 104 834 .21 0 -1.907 0 0 4.815 3.75 .208 .267 .88 26 34 90 98 -1.907
6 1116 306 652 72 580 743 92 835 .3 0 -1.734 0 0 4.25 3.326 .235 .301 1.56 26 34 99 107 -1.734
7 1148 260 648 80 568 728 102 830 .3 0 -1.35 0 0 3.25 2.549 .308 .392 1.28 26 34 108 116 -1.35
8 1124 337 660 90 570 730 116 846 .15 0 -1.539 0 0 3.744 2.905 .267 .344 .58 26 34 117 125 -1.539
9 1076 205 645 95 550 705 121 826 .11 0 -.761 0 0 2.158 1.694 .463 .59 .2 26 34 125 133 -.761
10 1143 1422 1962 1355 607 778 1737 2515 .93 0 .289 0 0 1.049 .819 .953 1.222 .93 26 34 134 142 .289
11 1151 412 667 95 572 733 122 855 .09 0 -1.756 0 0 4.337 3.377 .231 .296 .33 26 34 143 151 -1.756
12 1012 325 659 75 584 748 96 844 .46 0 -1.759 0 0 4.333 3.385 .231 .295 2.39 26 34 152 160 -1.759
13 965 281 698 149 549 703 191 894 .6 0 -.557 0 0 1.886 1.471 .53 .68 .85 26 34 160 168 -.557
14 992 616 754 198 556 712 254 966 .81 0 -1.278 0 0 3.111 2.425 .321 .412 2.95 26 34 169 177 -1.278
15 1111 632 1321 727 594 761 932 1693 .74 0 .56 0 0 .869 .678 1.15 1.475 .64 26 34 178 186 .56
16 988 280 646 104 542 694 134 828 .32 0 -1.063 0 0 2.692 2.09 .371 .479 1.2 26 34 187 195 -1.063
17 951 164 666 115 551 706 147 853 .51 0 -.158 0 0 1.426 1.116 .701 .896 .36 26 34 195 203 -.158
18 997 205 641 101 540 692 129 821 .15 0 -.668 0 0 2.03 1.589 .493 .629 .44 26 34 204 212 -.668
19 1048 131 654 93 561 719 119 838 .17 0 -.139 0 0 1.409 1.101 .71 .908 .27 26 34 213 221 -.139
20 1134 295 650 80 570 730 103 833 .25 0 -1.518 0 0 3.688 2.864 .271 .349 1.18 26 34 222 230 -1.518

Total number of rows: 9984

Table truncated, full table size 974 Kbytes.




Supplementary data files not provided
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