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Sample GSM2161 Query DataSets for GSM2161
Status Public on Jun 27, 2002
Title Serum 0.5
Sample type RNA
 
Channel 1
Source name T=0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name 30 minutes
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Serum-response
Subcategory: Fibroblasts
Scanning Software: unknown
Software version: unknown
Lot batch = 411
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL169
Series (2)
GSE55 Serum stimulation of fibroblasts experiment set
GSE58 Serum stimulation of fibroblasts

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1316 187 847 94 753 776 97 873 .12 0 -.947 0 0 1.989 1.928 .503 .519 .25 24 32 55 63 -.947
2 1462 199 867 103 764 787 106 893 .48 0 -.909 0 0 1.932 1.877 .518 .533 1.27 24 32 63 71 -.909
3 1527 175 838 89 749 772 91 863 .06 0 -.943 0 0 1.966 1.923 .509 .52 .14 24 32 72 80 -.943
4 1502 278 766 116 650 670 119 789 0 -1.224 0 0 2.397 2.336 .417 .428 24 32 81 89 -1.224
5 1375 308 878 130 748 771 134 905 0 -1.201 0 0 2.369 2.299 .422 .435 24 32 89 97 -1.201
6 1376 180 880 105 775 798 109 907 .29 0 -.724 0 0 1.714 1.651 .583 .606 .61 24 32 98 106 -.724
7 1263 183 928 92 836 861 95 956 .25 0 -.946 0 0 1.989 1.926 .503 .519 .49 24 32 107 115 -.946
8 1260 203 1001 157 844 870 161 1031 .62 0 -.334 0 0 1.293 1.261 .773 .793 .56 24 32 116 124 -.334
9 1206 177 949 134 815 840 138 978 .17 0 -.359 0 0 1.321 1.283 .757 .78 .26 24 32 124 132 -.359
10 1257 1604 2358 1462 896 923 1507 2430 .91 0 -.09 0 0 1.097 1.064 .911 .94 1.18 24 32 133 141 -.09
11 1235 240 974 113 861 887 117 1004 .11 0 -1.037 0 0 2.124 2.051 .471 .488 .2 24 32 142 150 -1.037
12 1261 235 970 122 848 874 126 1000 .24 0 -.899 0 0 1.926 1.865 .519 .536 .36 24 32 151 159 -.899
13 1222 309 1046 244 802 826 252 1078 .89 0 -.294 0 0 1.266 1.226 .79 .816 1.15 24 32 159 167 -.294
14 1292 512 986 111 875 902 114 1016 .02 0 -2.167 0 0 4.613 4.491 .217 .223 .16 24 32 168 176 -2.167
15 1283 794 1817 916 901 928 945 1873 .79 0 .251 0 0 .867 .84 1.154 1.19 .97 24 32 177 185 .251
16 1195 208 951 111 840 865 115 980 .48 0 -.855 0 0 1.874 1.809 .534 .553 .91 24 32 186 194 -.855
17 1208 169 1007 153 854 880 158 1038 0 -.097 0 0 1.105 1.07 .905 .935 24 32 194 202 -.097
18 1211 159 1028 179 849 875 184 1059 .53 0 .211 0 0 .888 .864 1.126 1.157 .25 24 32 203 211 .211
19 1177 201 954 129 825 850 133 983 0 -.596 0 0 1.558 1.511 .642 .662 24 32 212 220 -.596
20 1166 199 1006 156 850 876 161 1037 .29 0 -.306 0 0 1.276 1.236 .784 .809 .33 24 32 221 229 -.306

Total number of rows: 9984

Table truncated, full table size 989 Kbytes.




Supplementary data files not provided
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