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Sample GSM2151 Query DataSets for GSM2151
Status Public on Jun 27, 2002
Title BC2 Lymph Node X NCI reference
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name BC2 Lymph Node
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Breast
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = dtp3685
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 5264 87 2772 12 2760 3136 14 3150 -.03 0 -2.636 2.03 0 0 7.25 6.214 .138 .161 -.02 22 30 88 96 -2.636
2 5416 -18 2800 -16 2816 3200 -19 3181 .09 0 2.71 0 0 0 .06 22 30 96 104
3 5600 139 3080 168 2912 3309 191 3500 .69 0 .458 1.36 0 0 .827 .728 1.209 1.374 .51 22 30 105 113 .458
4 5704 -128 2855 -49 2904 3300 -56 3244 .07 0 .68 0 0 0 .03 22 30 114 122
5 5752 153 2887 -1 2888 3281 -1 3280 .22 0 .45 0 0 0 .07 22 30 122 130
6 5752 28 2799 -33 2832 3218 -38 3180 .31 0 1.36 0 0 0 .27 22 30 131 139
7 5744 4 2753 -39 2792 3172 -44 3128 .18 0 1.06 0 0 0 .1 22 30 140 148
8 5720 22 2740 -12 2752 3127 -14 3113 .07 0 1.88 0 0 0 .06 22 30 149 157
9 5704 -155 2657 -55 2712 3081 -62 3019 .03 0 .68 0 0 0 .03 22 30 157 165
10 5680 54 2684 -4 2688 3054 -4 3050 .48 0 1.12 0 0 0 .24 22 30 166 174
11 5632 49 2541 -115 2656 3018 -131 2887 .37 0 .9 0 0 0 .22 22 30 175 183
12 5624 240 2637 5 2632 2990 6 2996 -.15 0 -5.322 .54 0 0 48 40 .021 .025 -.09 22 30 184 192 -5.322
13 5608 -169 2532 -84 2616 2972 -95 2877 .34 0 .94 0 0 0 .18 22 30 192 200
14 5576 -62 2408 -200 2608 2963 -227 2736 .08 0 .76 0 0 0 .03 22 30 201 209
15 5552 -135 2576 -8 2584 2936 -9 2927 .39 0 .96 0 0 0 .18 22 30 210 218
16 5536 -69 2799 239 2560 2909 271 3180 .64 0 3.14 0 0 0 1.6 22 30 219 227
17 5528 -66 2497 -39 2536 2881 -44 2837 .25 0 2.26 0 0 0 .09 22 30 227 235
18 5528 -18 2471 -57 2528 2872 -65 2807 .24 0 1.01 0 0 0 .11 22 30 236 244
19 5528 152 2371 -149 2520 2863 -169 2694 .21 0 .37 0 0 0 .08 22 30 245 253
20 5536 -165 2468 -68 2536 2881 -77 2804 .17 0 2.98 0 0 0 .09 22 30 253 261

Total number of rows: 9984

Table truncated, full table size 1031 Kbytes.




Supplementary data files not provided
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