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Sample GSM2150 Query DataSets for GSM2150
Status Public on Jun 27, 2002
Title Normal Breast
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normal Breast
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Breast
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = dtp3684
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 2384 291 1756 -12 1768 1637 -12 1625 .13 0 .24 0 0 0 .03 10 18 77 85
2 2368 -89 1764 4 1760 1629 4 1633 .09 0 .83 0 0 0 .07 10 18 85 93
3 2352 -198 1754 -6 1760 1629 -5 1624 .2 0 1.46 0 0 0 .13 10 18 94 102
4 2312 -4 1725 -27 1752 1622 -25 1597 .15 0 .92 0 0 0 .1 10 18 103 111
5 2328 129 1734 -18 1752 1622 -17 1605 .2 0 .72 0 0 0 .1 10 18 111 119
6 2344 -2 1691 -69 1760 1629 -64 1565 .05 0 .2 0 0 0 .03 10 18 120 128
7 2344 -61 1733 -27 1760 1629 -25 1604 -.36 0 .65 0 0 0 -.32 10 18 129 137
8 2376 -117 1740 -28 1768 1637 -26 1611 .3 0 3.96 0 0 0 .33 10 18 138 146
9 2384 -2 1741 -19 1760 1629 -17 1612 .19 0 .65 0 0 0 .08 10 18 146 154
10 2400 302 2404 636 1768 1637 588 2225 .76 0 .961 2 0 0 .475 .514 2.106 1.947 1.32 10 18 155 163 .961
11 2416 226 1926 158 1768 1637 146 1783 .73 0 -.63 .81 0 0 1.43 1.548 .699 .646 .54 10 18 164 172 -.63
12 2416 154 1724 -36 1760 1629 -33 1596 .03 0 .28 0 0 0 .01 10 18 173 181
13 2464 -111 1728 -40 1768 1637 -37 1600 -.08 0 .76 0 0 0 -.04 10 18 181 189
14 2568 532 2255 479 1776 1644 443 2087 .94 -100 .61 0 0 1.111 1.201 .9 .833 .96 10 18 190 198 -.264
15 2600 377 2041 265 1776 1644 245 1889 .14 0 -.622 .72 0 0 1.423 1.539 .703 .65 .1 10 18 199 207 -.622
16 2624 175 1739 -37 1776 1644 -34 1610 .38 0 .39 0 0 0 .09 10 18 208 216
17 2552 -214 1765 -11 1776 1644 -10 1634 .19 0 .98 0 0 0 .09 10 18 216 224
18 2448 -75 1753 -15 1768 1637 -14 1623 .16 0 1.47 0 0 0 .08 10 18 225 233
19 2408 196 1756 -12 1768 1637 -12 1625 .08 0 .3 0 0 0 .03 10 18 234 242
20 2416 63 1714 -62 1776 1644 -57 1587 .21 0 .62 0 0 0 .13 10 18 242 250

Total number of rows: 9984

Table truncated, full table size 1052 Kbytes.




Supplementary data files not provided
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