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Sample GSM2147 Query DataSets for GSM2147
Status Public on Jun 27, 2002
Title CAKI-1 (CL9015) RENAL
Sample type RNA
 
Channel 1
Source name Reference Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name CAKI-1 (CL9015) RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = dtp2836a
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOP BOT LEFT RIGHT UNF_VALUE
1 1224 32 652 20 632 415 13 428 .03 0 -1.3 .44 0 0 1.6 2.462 .625 .406 .03 23 31 32 40 -1.3
2 1232 -7 627 -5 632 415 -3 412 -.18 0 .77 0 0 0 -.11 23 31 40 48
3 1216 30 637 5 632 415 4 419 .18 0 -2.907 .49 0 0 6 7.5 .167 .133 .14 23 31 49 57 -2.907
4 1224 15 634 10 624 410 7 417 .12 0 -1.1 .6 0 0 1.5 2.143 .667 .467 .16 23 31 58 66 -1.1
5 1216 3 614 -2 616 405 -2 403 .14 0 .6 0 0 0 .13 23 31 67 75
6 1216 3 591 -25 616 405 -17 388 .14 0 .63 0 0 0 .11 23 31 75 83
7 1216 332 676 52 624 410 34 444 .64 0 -3.288 .37 0 0 6.385 9.765 .157 .102 .11 23 31 84 92 -3.288
8 1248 49 675 27 648 426 18 444 .54 0 -1.445 .92 0 0 1.815 2.722 .551 .367 .59 23 31 93 101 -1.445
9 1248 247 1017 345 672 442 227 669 .75 0 -.122 .82 0 0 .716 1.088 1.397 .919 1.41 23 31 102 110 -.122
10 1256 344 1176 496 680 447 326 773 .85 0 -.078 .89 0 0 .694 1.055 1.442 .948 1.4 23 31 110 118 -.078
11 1240 42 704 32 672 442 21 463 .34 0 -1 .67 0 0 1.313 2 .762 .5 .37 23 31 119 127 -1
12 1240 17 577 -103 680 447 -68 379 -.27 0 .13 0 0 0 -.19 23 31 128 136
13 1232 -60 667 -21 688 452 -14 438 .29 0 .43 0 0 0 .46 23 31 137 145
14 1232 -13 696 16 680 447 10 457 .36 0 1.24 0 0 0 .49 23 31 145 153
15 1232 47 754 90 664 436 60 496 .15 0 .352 .71 0 0 .522 .783 1.915 1.277 .25 23 31 154 162 .352
16 1224 26 639 -17 656 431 -11 420 .2 0 .84 0 0 0 .23 23 31 163 171
17 1208 -33 615 -25 640 421 -17 404 .15 0 .5 0 0 0 .15 23 31 172 180
18 1192 -25 628 12 616 405 8 413 -.07 0 1.84 0 0 0 -.08 23 31 180 188
19 1184 34 573 -35 608 400 -24 376 -.17 0 .22 0 0 0 -.11 23 31 189 197
20 1176 -19 624 8 616 405 5 410 -.1 0 .24 0 0 0 -.12 23 31 198 206

Total number of rows: 9984

Table truncated, full table size 1033 Kbytes.




Supplementary data files not provided
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