|
| Status |
Public on Jun 27, 2002 |
| Title |
Total RNA Polio vs. Mock |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Mock Infected HeLa 3 hours Total RNA
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| Channel 2 |
| Source name |
Polio Infected HeLa 3 hours Total RNA
|
| Organism |
Homo sapiens |
| Extracted molecule |
total RNA |
| |
|
| |
| Description |
Category: Infection
Subcategory: Polio virus
This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators.
Scanning Software: unknown
Software version: unknown
Lot batch = nci2791
|
| |
|
| Submission date |
Jun 21, 2002 |
| Last update date |
May 27, 2005 |
| Organization |
Stanford Microarray Database (SMD) |
| E-mail(s) |
array@genome.stanford.edu
|
| Phone |
650-498-6012
|
| URL |
http://genome-www5.stanford.edu/
|
| Department |
Stanford University, School of Medicine
|
| Street address |
300 Pasteur Drive
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platform ID |
GPL167 |
| Series (1) |
| GSE62 |
mRNAs translated at eIF4F |
|
| Data table header descriptions |
| ID_REF |
|
| CH1B_MEDIAN |
median channel 1 background |
| CH1D_MEAN |
difference between CH1I_MEAN and CH1B_MEAN |
| CH2I_MEAN |
mean channel 2 signal |
| CH2D_MEAN |
difference of CH2I_MEAN and CH2B_MEAN |
| CH2B_MEDIAN |
median of channel 2 background |
| CH2BN_MEDIAN |
normalized CH2B_MEDIAN |
| CH2DN_MEAN |
normalized CH2D_MEAN |
| CH2IN_MEAN |
normalized CH2I_MEAN |
| CORR |
simple correlation coefficient of channel 1 and channel 2 pixels |
| FLAG |
user defined flag (default=0) |
| VALUE |
aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN |
| PERGTBCH1I_1SD |
standard deviation of fraction of pixels greater than CH1B_MEAN |
| PERGTBCH2I_1SD |
standard deviation of fraction of pixels greater than CH2B_MEAN |
| RAT1_MEAN |
ratio of CH1D_MEAN to CH2D_MEAN |
| RAT1N_MEAN |
ratio of CH1DN_MEAN to CH2DN_MEAN |
| RAT2_MEAN |
ratio of CH2D_MEAN to CH1D_MEAN |
| RAT2N_MEAN |
ratio of CH2DN_MEAN and CH1DN_MEAN |
| REGR |
slope of the simple regression line of channel 2 to channel 1 pixels |
| TOP |
vertical, short-axis spot ellipse minimum pixel coordinate |
| BOT |
vertical, short-axis spot ellipse maximum pixel coordinate |
| LEFT |
horizontal, long-axis spot ellipse minimum pixel coordinate |
| RIGHT |
horizontal, long-axis spot ellipse maximum pixel coordinate |
