NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2143 Query DataSets for GSM2143
Status Public on Jun 27, 2002
Title HCT-116_CL4003_COLON
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCT-116_CL4003_COLON
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2816
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1035 864 22 1345 41 1532 1304 1417 44 1461 .933 0 1 1.5 0 0 .537 .5 1.864 2 1.128 1213 52 26 34 63 71 1
2 1003 864 9 1277 1498 1312 1426 1388 .953 0 1.4 0 0 1.165 1069 52 26 34 71 79
3 969 856 1301 1460 1320 1434 1414 .953 0 .8 0 0 0 1.183 929 52 26 34 80 88
4 884 856 1323 3 1341 1320 1434 4 1438 .53 0 1.3 0 0 0 .414 931 52 26 34 89 97
5 868 856 42 1364 36 1331 1328 1443 39 1482 .109 0 -.107 1.333 0 0 1.167 1.077 .857 .929 .115 931 52 26 34 98 106 -.107
6 868 864 1324 1341 1336 1452 1439 .171 0 2.444 0 0 0 .283 925 52 26 34 106 114
7 876 872 41 1531 187 1350 1344 1460 204 1664 .815 0 2.315 1.625 1 3 .219 .201 4.561 4.976 3.102 933 52 26 34 115 123 2.315
8 877 872 13 1346 1360 1352 1469 1463 .142 0 1.692 0 0 .225 931 52 26 34 124 132
9 876 872 56 1349 1356 1352 1469 1466 .145 0 1.333 0 0 .23 931 52 26 34 133 141
10 884 880 283 1667 315 1363 1352 1469 342 1811 .826 0 .273 1.189 36 17 .898 .827 1.113 1.208 .998 925 52 26 34 141 149 .273
11 887 880 3 1387 19 1378 1368 1486 21 1507 .152 0 2.807 1.75 0 0 .158 .143 6.333 7 .258 931 52 26 34 150 158 2.807
12 887 888 17 1430 62 1380 1368 1486 68 1554 .206 0 2 1.154 0 0 .274 .25 3.647 4 .337 931 52 26 34 159 167 2
13 893 888 13 1408 32 1381 1376 1495 35 1530 .151 0 1.429 2.583 0 0 .406 .371 2.462 2.692 .272 931 52 26 34 168 176 1.429
14 896 888 124 1443 67 1390 1376 1495 73 1568 .373 0 -.764 .927 0 0 1.851 1.699 .54 .589 .532 925 52 26 34 176 184 -.764
15 901 888 66 1413 37 1408 1376 1495 40 1535 .696 0 -.722 1.208 0 0 1.784 1.65 .561 .606 1.299 925 52 26 34 185 193 -.722
16 907 896 1399 15 1413 1384 1504 16 1520 .693 0 2 0 0 0 1.373 931 52 26 34 194 202
17 908 896 11 1421 29 1420 1392 1513 31 1544 .693 0 1.495 1.222 0 0 .379 .355 2.636 2.818 1.374 935 52 26 34 203 211 1.495
18 910 896 1388 1424 1392 1513 1508 .725 0 1 0 0 0 1.469 933 52 26 34 211 219
19 903 904 1391 1408 1400 1521 1511 0 .955 0 0 0 937 52 26 34 220 228
20 906 904 1418 18 1409 1400 1521 20 1541 .109 0 1.5 0 0 0 .217 947 52 26 34 229 237

Total number of rows: 9984

Table truncated, full table size 1256 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap