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Sample GSM2142 Query DataSets for GSM2142
Status Public on Jun 27, 2002
Title EKVX__CL1008_NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name EKVX__CL1008_NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2829
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1364 1344 18 1525 101 1467 1424 1636 116 1752 .674 0 2.688 1.672 1 5 .178 .155 5.611 6.444 1.252 1131 52 14 22 84 92 2.688
2 1376 1352 1356 1490 1448 1664 1558 .545 0 .556 0 0 0 .803 987 52 14 22 92 100
3 1379 1352 1244 1504 1456 1673 1429 .564 0 1 0 0 .84 851 52 14 22 101 109
4 1365 1344 1257 1465 1432 1645 1444 .455 0 .045 0 0 0 .64 849 52 14 22 110 118
5 1354 1336 32 1240 1436 1408 1618 1425 .424 0 .667 0 0 .63 849 52 14 22 119 127
6 1349 1328 1232 1425 1400 1609 1416 .454 0 1 0 1 0 .69 843 52 14 22 127 135
7 1335 1320 49 1296 1430 1376 1581 1489 .355 0 1.643 0 0 .745 849 52 14 22 136 144
8 1389 1304 10 1250 1554 1360 1563 1436 .913 0 1.538 0 0 2.128 849 52 14 22 145 153
9 1368 1288 1200 1525 1344 1544 1379 .917 0 .118 0 0 0 2.138 849 52 14 22 154 162
10 1351 1280 282 1289 1504 1336 1535 1481 .875 0 .278 7 0 1.977 843 52 14 22 162 170
11 1361 1288 14 1141 1497 1328 1526 1311 .917 0 .3 0 0 2.164 843 52 14 22 171 179
12 1366 1296 24 1201 1485 1336 1535 1380 .932 0 .395 0 0 2.149 849 52 14 22 180 188
13 1301 1296 1191 1361 1344 1544 1368 .127 0 .267 0 0 0 .203 849 52 14 22 189 197
14 1316 1312 5 1074 1379 1368 1572 1234 .162 0 1 0 0 .341 843 52 14 22 197 205
15 1327 1320 35 1293 1407 1376 1581 1486 .287 0 1.154 0 0 .743 843 52 14 22 206 214
16 1327 1312 24 1289 1434 1400 1609 1481 .331 0 .25 0 0 .763 849 52 14 22 215 223
17 1320 1304 40 1311 1445 1432 1645 1506 .486 0 .114 1 1 .788 849 52 14 22 224 232
18 1325 1312 1323 1474 1464 1682 1520 .348 0 .813 0 0 0 .8 843 52 14 22 232 240
19 1327 1320 1129 1527 1528 1756 1297 .537 0 .5 0 0 0 1.449 843 52 14 22 241 249
20 1310 1312 1271 1516 1520 1747 1460 .3 0 1.4 0 0 0 .705 849 52 14 22 250 258

Total number of rows: 9984

Table truncated, full table size 1220 Kbytes.




Supplementary data files not provided
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