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Sample GSM2139 Query DataSets for GSM2139
Status Public on Jun 27, 2002
Title UACC-257CL10021_MELANOMA
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name UACC-257CL10021_MELANOMA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2718
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1379 1344 24 992 1093 1024 1034 1002 .876 0 2.241 0 1 1.288 1213 52 30 38 61 69
2 1432 1312 62 1028 20 1140 1008 1018 20 1038 .901 0 -1.632 .455 0 1 3.1 3.1 .323 .323 .867 1085 52 29 37 69 77 -1.632
3 1466 1312 28 1022 22 1161 1000 1010 22 1032 .866 0 -.348 1.3 0 0 1.273 1.273 .786 .786 .793 945 52 29 37 78 86 -.348
4 1473 1304 30 964 1163 1000 1010 973 .879 0 .65 0 0 .804 951 52 29 37 87 95
5 1499 1304 29 957 1180 1000 1010 966 .878 0 .5 0 0 .797 951 52 29 37 96 104
6 1399 1304 49 986 1071 992 1002 995 .654 0 .474 0 0 .484 941 52 29 37 104 112
7 1394 1312 45 1005 5 1068 1000 1010 5 1015 .752 0 -3.17 1.2 0 1 9 9 .111 .111 .63 937 52 29 37 113 121 -3.17
8 1398 1320 48 969 1085 1000 1010 978 .803 0 .462 0 0 .848 939 52 29 37 122 130
9 1350 1312 22 993 1 1046 992 1002 1 1003 .722 0 -4.459 1 0 0 22 22 .045 .045 1.098 935 52 29 37 131 139 -4.459
10 1335 1312 215 1201 217 1019 984 993 220 1213 .764 0 .033 1.031 9 19 .991 .977 1.009 1.023 .965 925 52 29 37 139 147 .033
11 1346 1312 152 1083 83 1034 1000 1010 83 1093 .741 0 -.873 .6 3 1 1.831 1.831 .546 .546 .815 925 52 29 37 148 156 -.873
12 1333 1312 71 1007 15 1015 992 1002 15 1017 .445 0 -2.243 .655 0 0 4.733 4.733 .211 .211 .358 931 52 29 37 157 165 -2.243
13 1329 1312 71 1011 11 1025 1000 1010 11 1021 .48 0 -2.69 .342 0 0 6.455 6.455 .155 .155 .495 931 52 29 37 166 174 -2.69
14 1333 1320 84 1069 69 1028 1000 1010 69 1079 .557 0 -.284 .786 1 0 1.217 1.217 .821 .821 .585 925 52 29 37 174 182 -.284
15 1326 1320 24 1023 23 1021 1000 1010 23 1033 .326 0 -.061 .75 0 0 1.043 1.043 .958 .958 .422 925 52 29 37 183 191 -.061
16 1319 1312 44 1027 27 1020 1000 1010 27 1037 .28 0 -.705 1 0 0 1.63 1.63 .614 .614 .342 951 52 28 36 192 200 -.705
17 1320 1312 49 1021 13 1015 1008 1018 13 1031 .095 0 -1.914 .783 0 0 3.769 3.769 .265 .265 .081 951 52 28 36 201 209 -1.914
18 1325 1312 17 1010 2 1018 1008 1018 2 1020 0 -3.087 .4 0 0 8.5 8.5 .118 .118 945 52 28 36 209 217 -3.087
19 1334 1320 80 1103 79 1039 1024 1034 80 1114 .327 0 0 1.188 0 0 1.013 1 .988 1 .435 945 52 28 36 218 226 0
20 1345 1328 78 1093 61 1041 1032 1042 62 1104 .304 0 -.331 .625 0 0 1.279 1.258 .782 .795 .307 951 52 28 36 227 235 -.331

Total number of rows: 9984

Table truncated, full table size 1264 Kbytes.




Supplementary data files not provided
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