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Sample GSM2133 Query DataSets for GSM2133
Status Public on Jun 27, 2002
Title SF-539__CL12016_CNS
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SF-539__CL12016_CNS
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2757
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 2348 2320 612 4 615 608 1013 7 1020 .154 0 .28 1 1 0 .058 1213 52 17 25 78 86
2 2380 2272 586 620 600 1000 976 .158 0 .5 0 0 0 .015 1069 52 17 25 86 94
3 2353 2200 597 5 632 592 986 9 995 .388 0 .4 0 0 0 .077 937 52 17 25 95 103
4 2320 2160 564 625 592 986 940 .407 0 .383 0 0 0 .078 931 52 17 25 104 112
5 2293 2120 577 623 592 986 961 .409 0 .444 0 0 0 .079 931 52 17 25 113 121
6 2251 2064 576 613 584 973 960 .414 0 .571 0 0 0 .078 925 52 17 25 121 129
7 2087 2024 546 584 576 960 910 .491 0 .108 0 0 0 .136 925 52 17 25 130 138
8 2060 2016 561 577 568 946 935 .48 0 .6 0 1 0 .157 931 52 17 25 139 147
9 2024 1992 551 568 568 946 918 .229 0 .154 0 0 0 .068 931 52 17 25 148 156
10 2043 1976 565 747 187 566 560 933 312 1245 .642 0 -.857 .366 26 32 3.021 1.811 .331 .552 .164 925 52 17 25 156 164 -.857
11 2031 1960 559 566 560 933 931 .325 0 .263 0 0 0 .056 925 52 17 25 165 173
12 2029 1952 121 608 56 566 552 920 93 1013 .416 0 -.38 .429 1 1 2.161 1.301 .463 .769 .074 943 52 17 25 174 182 -.38
13 2021 1928 524 565 552 920 873 .376 0 .417 0 0 0 .065 931 52 17 25 183 191
14 1998 1920 201 610 50 570 560 933 83 1016 .589 0 -1.276 .277 0 0 4.02 2.422 .249 .413 .171 931 52 17 25 192 200 -1.276
15 1979 1912 116 613 53 574 560 933 88 1021 .446 0 -.399 .333 5 5 2.189 1.318 .457 .759 .137 925 52 17 25 200 208 -.399
16 1969 1912 50 546 581 576 960 910 .431 0 .165 1 0 .086 925 52 17 25 209 217
17 1989 1936 531 596 584 973 885 .381 0 .429 0 0 0 .118 931 52 17 25 218 226
18 1994 1944 93 599 7 608 592 986 12 998 .526 0 -2.954 .167 5 3 13.286 7.75 .075 .129 .209 931 52 17 25 227 235 -2.954
19 2001 1960 139 628 28 616 600 1000 46 1046 .401 0 -1.595 .2 3 1 4.964 3.022 .201 .331 .128 925 52 17 25 235 243 -1.595
20 2022 1976 21 593 626 608 1013 988 .328 0 .133 0 0 .134 925 52 17 25 244 252

Total number of rows: 9984

Table truncated, full table size 1221 Kbytes.




Supplementary data files not provided
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