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Sample GSM2131 Query DataSets for GSM2131
Status Public on Jun 27, 2002
Title NCI-H322_CL1017_NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NCI-H322_CL1017_NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2826
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1385 1328 1485 1807 1728 1986 1706 .272 0 1.6 0 0 0 .149 1213 52 25 33 87 95
2 1393 1328 1459 1842 1808 2078 1677 .278 0 1.375 0 0 0 .14 1069 52 25 33 95 103
3 1627 1328 1497 1895 1864 2142 1720 .454 0 0 0 0 .087 933 52 25 33 104 112
4 1612 1328 1440 1861 1832 2105 1655 .47 0 0 0 0 .087 931 52 25 33 113 121
5 1543 1312 1451 1842 1832 2105 1667 .443 0 2.286 0 0 0 .084 931 52 25 33 122 130
6 1538 1304 92 1500 1832 1816 2087 1724 .44 0 1 1 0 .078 925 52 25 33 130 138
7 1317 1304 1494 1834 1840 2114 1717 .391 0 32.8 0 1 0 1.099 931 52 25 33 139 147
8 1325 1312 1512 1852 1856 2133 1737 .364 0 1.889 0 0 0 .979 931 52 25 33 148 156
9 1346 1328 1600 1850 1856 2133 1839 .273 0 0 0 0 .417 931 52 25 33 157 165
10 1359 1336 479 1743 1859 1880 2160 2003 .302 0 .154 40 0 .224 925 52 25 33 165 173
11 1379 1344 1398 1879 1888 2170 1606 .392 0 0 0 0 .553 925 52 25 33 174 182
12 1383 1344 1517 1880 1888 2170 1743 .443 0 30 0 0 0 .566 931 52 25 33 183 191
13 1366 1336 1485 1871 1880 2160 1706 .513 0 0 0 0 .772 931 52 25 33 192 200
14 1365 1336 1281 1885 1872 2151 1472 .434 0 0 0 0 .801 925 52 25 33 200 208
15 1418 1344 1472 1920 1888 2170 1691 .21 0 2.111 0 0 0 .109 925 52 25 33 209 217
16 1429 1352 1498 1944 1888 2170 1721 .24 0 0 0 0 .127 931 52 25 33 218 226
17 1442 1368 1535 1981 1904 2188 1764 .231 0 1.667 0 0 0 .129 931 52 25 33 227 235
18 1461 1384 1549 2052 1976 2271 1780 .236 0 2.176 0 0 0 .142 925 52 25 33 235 243
19 1456 1392 1212 2074 2008 2308 1393 .195 0 0 0 0 .152 925 52 25 33 244 252
20 1428 1400 1282 2089 2008 2308 1473 .669 0 0 0 0 1.874 931 52 25 33 253 261

Total number of rows: 9984

Table truncated, full table size 1239 Kbytes.




Supplementary data files not provided
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