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Sample GSM2130584 Query DataSets for GSM2130584
Status Public on Apr 22, 2016
Title MMpt1 hypoxia
Sample type RNA
 
Source name hypoxia, CD38++
Organism Homo sapiens
Characteristics condition: hypoxia
disease state: myeloma
Treatment protocol RPMI1640 plus 10% FCS and 2% human IL-6
Growth protocol normoxia: 21%O2, hypoxia: 1%O2.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted with Trizol.
Label Cy3
Label protocol As materials and methods for DNA mycroarray protocol version 6.7 (Agilent).
 
Hybridization protocol As materials and methods for DNA mycroarray protocol version 6.7 (Agilent).
Scan protocol Agilent G2600A SureScan Microarray Scanner System.
Data processing GeneSpring (Agilent), computed normalized signal intencity with 75%tile normalization.
 
Submission date Apr 21, 2016
Last update date Apr 22, 2016
Contact name Sho Ikeda
E-mail(s) sikeda@med.akita-u.ac.jp
Organization name Akita univ.
Department Hematology
Lab Tagawa labo
Street address Hondo 1-1-1
City Akita
ZIP/Postal code 010-8543
Country Japan
 
Platform ID GPL17077
Series (1)
GSE80545 Gene expression of myeloma patient samples under hypoxia

Data table header descriptions
ID_REF
VALUE Log2 value.

Data table
ID_REF VALUE
A_23_P117082 6.19E-04
A_33_P3246448 0.068906784
A_33_P3318220 0.07044077
A_33_P3236322 1.4628615
A_33_P3319925 -0.17046094
A_21_P0000509 -1.419255
A_21_P0000744 -0.7111721
A_24_P215804 0.36554694
A_23_P110167 -2.0883975
A_33_P3211513 -0.034702778
A_23_P103349 0.061316967
A_32_P61480 0.08522177
A_33_P3788124 -0.38923597
A_33_P3414202 -0.017236948
A_33_P3316686 -0.4229691
A_33_P3300975 1.1893723
A_33_P3263061 -0.7080815
A_33_P3261373 -0.13596201
A_24_P278460 -0.5342343
A_21_P0013109 0.28693056

Total number of rows: 50737

Table truncated, full table size 1224 Kbytes.




Supplementary file Size Download File type/resource
GSM2130584_SG13344329_253949429816_S001_GE1_1105_Oct12_2_1.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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