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Sample GSM2130 Query DataSets for GSM2130
Status Public on Jun 27, 2002
Title KM12__CL4017_COLON
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name KM12__CL4017_COLON
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2825
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1133 1080 50 623 647 624 770 769 .247 0 .667 0 0 .108 1217 52 26 34 83 91
2 1124 1080 37 621 630 624 770 766 .038 0 .542 0 0 .006 1073 52 26 34 91 99
3 1084 1072 20 612 626 624 770 755 .053 0 .3 0 0 .036 933 52 26 34 100 108
4 1083 1072 1 624 8 622 616 760 10 770 .038 0 3.322 1 0 0 .125 .1 8 10 .027 935 52 26 34 109 117 3.322
5 1099 1080 618 2 617 616 760 2 762 0 1.25 0 0 0 931 52 26 34 118 126
6 1100 1080 601 611 608 750 741 0 .75 0 0 0 925 52 26 34 126 134
7 1104 1088 106 633 25 609 608 750 31 781 .062 0 -1.774 .48 0 0 4.24 3.419 .236 .292 .02 933 52 26 34 135 143 -1.774
8 1103 1088 17 620 20 603 600 740 25 765 .035 0 .556 .7 0 0 .85 .68 1.176 1.471 .011 931 52 26 34 144 152 .556
9 1087 1080 605 13 598 592 730 16 746 0 1.182 0 0 0 931 52 26 34 153 161
10 1083 1072 546 954 362 598 592 730 447 1177 .853 0 -.289 .649 40 51 1.508 1.221 .663 .819 .553 925 52 26 34 161 169 -.289
11 1107 1072 90 612 28 592 584 720 35 755 .159 0 -1.363 .458 1 0 3.214 2.571 .311 .389 .027 931 52 26 34 170 178 -1.363
12 1246 1072 24 582 605 584 720 718 .916 0 .778 0 0 .111 931 52 26 34 179 187
13 1267 1080 78 587 3 619 584 720 4 724 .82 0 -4.285 .5 0 0 26 19.5 .038 .051 .119 931 52 26 34 188 196 -4.285
14 1304 1080 221 702 118 619 584 720 146 866 .792 0 -.598 .769 5 7 1.873 1.514 .534 .661 .113 925 52 26 34 196 204 -.598
15 1301 1072 120 660 76 617 584 720 94 814 .803 0 -.352 .644 0 1 1.579 1.277 .633 .783 .113 925 52 26 34 205 213 -.352
16 1134 1072 55 604 20 598 584 720 25 745 .472 0 -1.138 .438 0 1 2.75 2.2 .364 .455 .131 931 52 26 34 214 222 -1.138
17 1165 1080 36 576 589 584 720 711 .404 0 .722 0 0 .03 931 52 26 34 223 231
18 1164 1072 66 579 588 584 720 714 .434 0 .167 0 0 .03 925 52 26 34 231 239
19 1126 1072 75 678 94 586 584 720 117 837 .274 0 .642 1.235 1 1 .798 .641 1.253 1.56 .029 929 52 26 34 240 248 .642
20 1125 1072 88 643 59 589 584 720 73 793 .284 0 -.27 .727 0 0 1.492 1.205 .67 .83 .03 939 52 26 34 249 257 -.27

Total number of rows: 9984

Table truncated, full table size 1245 Kbytes.




Supplementary data files not provided
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