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Sample GSM2126

Query DataSets for GSM2126

Status

Public on Jun 27, 2002

Title

OVCAR-5_CL6003_OVARIAN

Sample type

RNA

Channel 1

Source name

Reference_Pool

Organism

Extracted molecule

total RNA

Channel 2

Source name

OVCAR-5_CL6003_OVARIAN

Organism

Extracted molecule

total RNA

Description

Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2815

Submission date

Jun 21, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (1)

Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	1154	1096		897		914	904	1027		1019	.756	0		1.2	0	0			0		.136	1213	52	23	31	62	70
2	1165	1104	14	935	23	921	912	1036	26	1062	.688	0	.893	.9	0	3	.609	.538	1.643	1.857	.141	1069	52	23	31	70	78	.893
3	1176	1104	14	902		925	912	1036		1025	.777	0		.778	0	0					.137	925	52	23	31	79	87
4	1143	1104	1	939	27	967	912	1036	31	1067	.888	0	4.954	1.188	0	0	.037	.032	27	31	1.015	931	52	23	31	88	96	4.954
5	1145	1104		919	7	966	912	1036	8	1044	.881	0		1.636	0	0			0		1.007	925	52	23	31	96	104
6	1145	1112		929	9	973	920	1045	10	1055	.883	0		1	0	0			0		1.01	925	52	23	31	105	113
7	1143	1104	40	972	36	983	936	1063	41	1104	.887	0	.036	1.167	0	0	1.111	.976	.9	1.025	1.012	931	52	23	31	114	122	.036
8	1148	1112	5	951	7	991	944	1072	8	1080	.883	0	.678	1.3	0	0	.714	.625	1.4	1.6	1.009	931	52	23	31	123	131	.678
9	1113	1112	26	906		946	944	1072		1029	.043	0		.375	0	0					.044	925	52	23	31	131	139
10	1121	1120	345	1331	379	954	952	1081	431	1512	.889	0	.321	1.11	40	42	.91	.8	1.099	1.249	1.007	925	52	23	31	140	148	.321
11	1135	1128	45	1037	77	963	960	1090	88	1178	.437	0	.968	.905	0	0	.584	.511	1.711	1.956	.473	931	52	23	31	149	157	.968
12	1139	1128	29	1000	48	961	952	1081	55	1136	.365	0	.923	1.053	0	0	.604	.527	1.655	1.897	.394	931	52	23	31	158	166	.923
13	1138	1128	16	999	39	963	960	1090	45	1135	.284	0	1.492	.875	0	0	.41	.356	2.438	2.813	.324	925	52	23	31	166	174	1.492
14	1129	1128	98	1050	90	965	960	1090	103	1193	.389	0	.072	.875	0	0	1.089	.951	.918	1.051	.355	921	52	23	31	175	183	.072
15	1128	1128	18	996	28	974	968	1100	31	1131	.162	0	.784	.636	0	0	.643	.581	1.556	1.722	.168	931	52	23	31	184	192	.784
16	1121	1120	58	963		974	968	1100		1094		0		.714	0	0						931	52	23	31	193	201
17	1118	1120	27	995	19	982	976	1109	21	1130	.127	0	-.363	.75	0	0	1.421	1.286	.704	.778	.135	925	52	23	31	201	209	-.363
18	1123	1128	17	976		984	976	1109		1109	.057	0		.643	0	0			0		.061	919	52	23	31	210	218
19	1133	1128	9	1006	22	998	984	1118	25	1143	.294	0	1.474	.462	0	0	.409	.36	2.444	2.778	.407	931	52	23	31	219	227	1.474
20	1131	1120	35	1029	45	994	984	1118	51	1169	.333	0	.543	1.118	0	0	.778	.686	1.286	1.457	.439	925	52	23	31	227	235	.543

Total number of rows: 9984

Table truncated, full table size 1271 Kbytes.

Supplementary data files not provided

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