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Sample GSM2125 Query DataSets for GSM2125
Status Public on Jun 27, 2002
Title HOP-92__CL1029_NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HOP-92__CL1029_NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2723
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1945 1928 2271 2647 2544 3220 2874 .273 0 2.417 0 0 0 .654 1213 52 37 45 41 49
2 1926 1904 2112 2434 2376 3007 2673 .273 0 0 0 0 .606 1085 52 36 44 49 57
3 1885 1864 49 1963 2141 2128 2693 2484 .392 0 .565 0 0 .674 945 52 36 44 58 66
4 1861 1848 54 1790 1970 1920 2430 2265 .236 0 1.095 0 0 .363 951 52 36 44 67 75
5 1852 1832 1612 1844 1784 2258 2040 .294 0 .95 0 0 0 .465 951 52 36 44 76 84
6 1824 1816 9 1524 1713 1688 2136 1929 .131 0 .778 0 0 .183 945 52 36 44 84 92
7 1823 1808 1540 1635 1624 2055 1949 .083 0 .683 0 0 0 .091 945 52 36 44 93 101
8 1814 1808 19 1488 1585 1576 1994 1883 .095 0 .618 0 0 .105 951 52 36 44 102 110
9 1811 1808 93 1490 1537 1536 1944 1886 .139 0 .417 0 0 .154 951 52 36 44 111 119
10 1804 1800 87 1407 1488 1464 1853 1781 .114 0 .463 1 0 .099 945 52 36 44 119 127
11 1796 1792 37 1323 1441 1416 1792 1674 .032 0 .429 0 0 .026 945 52 36 44 128 136
12 1777 1776 44 1241 1388 1368 1731 1570 0 .372 0 0 951 52 36 44 137 145
13 1786 1784 70 1268 1352 1344 1701 1605 .054 0 .857 0 0 .054 951 52 36 44 146 154
14 1798 1800 1218 1340 1328 1681 1541 .176 0 .889 0 0 0 .184 945 52 36 44 154 162
15 1800 1792 64 1226 1343 1312 1660 1551 .045 0 .667 0 0 .07 945 52 36 44 163 171
16 1791 1776 67 1274 1325 1288 1630 1612 .067 0 .655 0 0 .098 951 52 36 44 172 180
17 1809 1800 1131 1321 1288 1630 1431 .103 0 .216 0 0 0 .143 947 52 36 44 181 189
18 1822 1808 30 1203 1315 1280 1620 1522 .098 0 .429 0 0 .131 937 52 36 44 189 197
19 1820 1816 1151 1283 1256 1589 1456 .211 0 .615 0 0 0 .244 933 52 36 44 198 206
20 1829 1824 17 1180 1264 1256 1589 1493 .072 0 .135 0 0 .072 935 52 36 44 207 215

Total number of rows: 9984

Table truncated, full table size 1225 Kbytes.




Supplementary data files not provided
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