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Sample GSM2124 Query DataSets for GSM2124
Status Public on Jun 27, 2002
Title MDA-MB-231_CL5005__BREAST
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name MDA-MB-231_CL5005__BREAST
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2708
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1798 1792 45 1155 1199 1176 1187 1166 .24 0 1.077 1 0 .29 1008 52 11 19 52 60
2 1783 1776 1175 1201 1176 1187 1186 .288 0 .684 0 0 0 .388 839 52 10 18 60 68
3 1742 1728 44 1147 1180 1168 1179 1158 .106 0 .571 0 0 .087 699 52 10 18 69 77
4 1736 1712 25 1122 1188 1176 1187 1133 .143 0 .271 0 0 .111 705 52 10 18 78 86
5 1741 1720 62 1250 74 1189 1176 1187 75 1262 .458 0 .275 .583 1 3 .838 .827 1.194 1.21 .551 705 52 10 18 87 95 .275
6 1746 1728 12 1166 1186 1176 1187 1177 .077 0 .455 0 0 .062 699 52 10 18 95 103
7 1756 1744 268 1196 12 1198 1184 1195 13 1208 .31 0 -4.366 .571 3 3 22.333 20.615 .045 .049 .121 699 52 10 18 104 112 -4.366
8 1904 1760 1165 1233 1192 1204 1176 .862 0 .636 0 0 0 .179 705 52 10 18 113 121
9 1899 1752 91 1171 1243 1216 1228 1182 .852 0 .429 0 0 .177 705 52 10 18 122 130
10 1899 1752 115 1257 33 1254 1224 1236 33 1269 .844 0 -1.801 1.154 0 0 3.485 3.485 .287 .287 .178 699 52 10 18 130 138 -1.801
11 1885 1744 1242 10 1258 1232 1244 10 1254 .866 0 1 0 0 0 .176 699 52 10 18 139 147
12 1738 1728 24 1237 1243 1240 1252 1249 .155 0 1.125 0 0 .141 705 52 10 18 148 156
13 1724 1720 444 1245 1259 1248 1260 1257 .704 0 .593 3 1 .098 705 52 10 18 157 165
14 1756 1744 768 1360 88 1282 1272 1284 89 1373 .888 0 -3.109 .5 3 1 8.727 8.629 .115 .116 .092 699 52 10 18 165 173 -3.109
15 1792 1776 48 1307 11 1320 1296 1309 11 1320 .451 0 -2.126 .625 1 1 4.364 4.364 .229 .229 .345 699 52 10 18 174 182 -2.126
16 1814 1800 91 1322 10 1338 1312 1325 10 1335 .17 0 -3.186 1.118 0 0 9.1 9.1 .11 .11 .194 705 52 10 18 183 191 -3.186
17 1824 1808 98 1341 21 1355 1320 1333 21 1354 .169 0 -2.222 .421 0 0 4.667 4.667 .214 .214 .179 705 52 10 18 192 200 -2.222
18 1822 1808 46 1325 1357 1328 1341 1338 .116 0 1.176 0 0 .124 699 52 10 18 200 208
19 1796 1784 1223 1351 1336 1349 1235 .374 0 .667 0 0 0 .349 699 52 10 18 209 217
20 1784 1776 1318 1358 1344 1357 1331 .193 0 1 0 1 0 .192 705 52 10 18 218 226

Total number of rows: 9984

Table truncated, full table size 1248 Kbytes.




Supplementary data files not provided
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