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Sample GSM2123 Query DataSets for GSM2123
Status Public on Jun 27, 2002
Title NCI-H226_CL1013__NSCLC
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NCI-H226_CL1013__NSCLC
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2837
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1219 1216 29 428 432 432 568 563 .164 0 .333 0 0 .084 1213 52 18 26 23 31
2 1226 1224 434 2 434 432 568 3 571 .08 0 .429 0 0 0 .047 1069 52 18 26 31 39
3 1231 1232 433 1 439 432 568 1 569 .05 0 1 0 0 0 .027 937 52 18 26 40 48
4 1226 1224 413 435 432 568 543 .112 0 .546 0 0 0 .053 931 52 18 26 49 57
5 1219 1216 6 421 438 432 568 553 .018 0 .5 0 0 .011 931 52 18 26 58 66
6 1212 1208 434 2 438 432 568 3 571 .057 0 .567 0 0 0 .031 925 52 18 26 66 74
7 1204 1200 2 447 15 439 432 568 20 588 0 3.322 .667 0 0 .133 .1 7.5 10 925 52 18 26 75 83 3.322
8 1194 1184 66 458 26 441 432 568 34 602 .172 0 -.957 .462 0 0 2.538 1.941 .394 .515 .096 931 52 18 26 84 92 -.957
9 1198 1192 29 438 445 440 578 576 .019 0 .391 0 0 .011 931 52 18 26 93 101
10 1202 1192 422 777 337 447 440 578 444 1022 .88 0 .073 .75 36 48 1.252 .95 .799 1.052 .606 925 52 18 26 101 109 .073
11 1209 1208 34 452 4 451 448 589 5 594 0 -2.766 .4 0 0 8.5 6.8 .118 .147 925 52 18 26 110 118 -2.766
12 1222 1216 452 4 451 448 589 5 594 .007 0 .4 0 1 0 .004 943 52 18 26 119 127
13 1243 1232 456 8 450 448 589 11 600 0 .556 0 0 0 931 52 18 26 128 136
14 1244 1232 9 530 82 452 448 589 108 697 .347 0 3.585 1.037 0 5 .11 .083 9.111 12 .191 931 52 18 26 137 145 3.585
15 1241 1224 60 496 40 455 456 600 52 652 .227 0 -.206 .81 0 5 1.5 1.154 .667 .867 .107 925 52 18 26 145 153 -.206
16 1246 1224 434 456 456 600 571 .095 0 .276 0 0 0 .036 925 52 18 26 154 162
17 1235 1216 430 454 456 600 565 .117 0 .222 0 0 0 .039 931 52 18 26 163 171
18 1232 1216 465 17 450 448 589 22 611 .033 0 1 0 0 0 .012 931 52 18 26 172 180
19 1233 1216 459 11 446 448 589 14 603 0 .6 0 0 0 929 52 18 26 180 188
20 1233 1216 21 478 38 447 440 578 50 628 .108 0 1.252 .556 0 0 .553 .42 1.81 2.381 .034 933 52 18 26 189 197 1.252

Total number of rows: 9984

Table truncated, full table size 1232 Kbytes.




Supplementary data files not provided
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